Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1074235	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1547949	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1547951	0.89[EUR][1000 genomes]
rs33999362	0.89[ASN][1000 genomes]
rs3774428	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3774440	0.98[ASN][1000 genomes]
rs3821846	0.95[EUR][1000 genomes]
rs3821847	0.94[ASN][1000 genomes]
rs55828852	0.96[EUR][1000 genomes]
rs59422128	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62251864	0.94[ASN][1000 genomes]
rs62251868	0.98[ASN][1000 genomes]
rs62251869	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62251870	0.95[ASN][1000 genomes]
rs62251903	0.95[ASN][1000 genomes]
rs62251904	0.95[ASN][1000 genomes]
rs62251905	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6764908	0.97[ASN][1000 genomes]
rs72957281	0.95[ASN][1000 genomes]
rs740756	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53564800-53579400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:53566400-53583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:53567800-53579400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:53569400-53571000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr3:53569400-53574200	Weak transcription	Fetal Intestine Small	intestine
7	chr3:53569400-53581800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:53569600-53581800	Weak transcription	Fetal Intestine Large	intestine
9	chr3:53570600-53579200	Weak transcription	Fetal Lung	lung

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