Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1074235	0.91[ASN][1000 genomes]
rs1547949	0.93[ASN][1000 genomes]
rs17053168	0.87[EUR][1000 genomes]
rs33999362	0.85[ASN][1000 genomes]
rs3774428	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774439	0.88[EUR][1000 genomes]
rs3774440	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3774441	0.86[EUR][1000 genomes]
rs3821847	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59422128	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59512909	0.95[ASN][1000 genomes]
rs62251864	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251868	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251869	0.91[ASN][1000 genomes]
rs62251870	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251903	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251904	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6764908	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs740756	0.95[ASN][1000 genomes]
rs9311502	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53552400-53568400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53559200-53563800	Weak transcription	Aorta	Aorta
3	chr3:53560400-53564600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:53560400-53565800	Weak transcription	Right Atrium	heart
5	chr3:53560400-53566800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:53560400-53568400	Weak transcription	Pancreas	Pancrea
7	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:53561000-53565600	Weak transcription	Fetal Intestine Small	intestine
9	chr3:53561000-53565800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:53561000-53568800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:53561600-53565800	Weak transcription	Fetal Lung	lung
12	chr3:53562800-53563000	Enhancers	Pancreatic Islets	Pancreatic Islet

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