Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53586030..53587817-chr3:53589041..53592025,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1074235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547949	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1547951	0.83[EUR][1000 genomes]
rs33999362	0.85[ASN][1000 genomes]
rs3774428	0.93[ASN][1000 genomes]
rs3774440	0.97[ASN][1000 genomes]
rs3821846	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3821847	0.98[ASN][1000 genomes]
rs55828852	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59422128	0.93[ASN][1000 genomes]
rs59512909	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62251864	0.93[ASN][1000 genomes]
rs62251868	0.97[ASN][1000 genomes]
rs62251870	1.00[ASN][1000 genomes]
rs62251903	1.00[ASN][1000 genomes]
rs62251904	1.00[ASN][1000 genomes]
rs62251905	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6764908	0.95[ASN][1000 genomes]
rs72957281	0.91[ASN][1000 genomes]
rs740756	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53579000-53592000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:53584800-53592600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
5	chr3:53589200-53590400	Flanking Active TSS	GM12878-XiMat	blood
6	chr3:53589800-53592400	Weak transcription	Fetal Lung	lung
7	chr3:53589800-53593600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53589800-53600800	Weak transcription	Fetal Intestine Small	intestine
9	chr3:53590000-53593400	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search: