Variant report

Variant	rs59529525
Chromosome Location	chr10:92690035-92690036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92689202..92690850-chr10:92693905..92696337,2	MCF-7	breast:
2	chr10:92689991..92690640-chr8:125486245..125486805,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000245149	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs41461347	1.00[AMR][1000 genomes]
rs60570258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317612	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317616	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317619	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317624	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317626	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7895858	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92681200-92690800	Weak transcription	Gastric	stomach
2	chr10:92683000-92690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:92687800-92690200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:92688000-92690800	Enhancers	Dnd41	blood
5	chr10:92688400-92699800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:92688600-92690200	Enhancers	NH-A	brain
7	chr10:92688600-92690200	Enhancers	NHDF-Ad	bronchial
8	chr10:92688800-92691800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:92688800-92692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:92689000-92691200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:92689000-92691200	Enhancers	Placenta	Placenta
12	chr10:92689000-92691200	Enhancers	Left Ventricle	heart
13	chr10:92689000-92691200	Enhancers	Psoas Muscle	Psoas
14	chr10:92689000-92691400	Enhancers	Right Atrium	heart
15	chr10:92689000-92691600	Enhancers	Adipose Nuclei	Adipose
16	chr10:92689000-92691600	Enhancers	Fetal Muscle Leg	muscle
17	chr10:92689000-92692000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:92689000-92692000	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:92689000-92692000	Enhancers	Fetal Thymus	thymus
20	chr10:92689200-92690400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:92689200-92690600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr10:92689200-92690800	Flanking Active TSS	HSMMtube	muscle
23	chr10:92689200-92691400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr10:92689200-92691600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:92689200-92691600	Enhancers	HMEC	breast
26	chr10:92689200-92691800	Flanking Active TSS	HUVEC	blood vessel
27	chr10:92689400-92690400	Weak transcription	Aorta	Aorta
28	chr10:92689400-92690400	Enhancers	NHLF	lung
29	chr10:92689400-92691600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:92689400-92691600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr10:92689400-92691800	Enhancers	Fetal Lung	lung
32	chr10:92689400-92695200	Weak transcription	Lung	lung
33	chr10:92689600-92690200	Flanking Active TSS	HSMM	muscle
34	chr10:92689600-92690400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:92689600-92690400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:92689600-92690600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:92689600-92691400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
38	chr10:92689600-92691400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:92689600-92691400	Enhancers	Fetal Stomach	stomach
40	chr10:92689600-92691400	Flanking Active TSS	Hela-S3	cervix
41	chr10:92689600-92691600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:92689600-92691600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr10:92689600-92691600	Enhancers	Thymus	Thymus
44	chr10:92689600-92691600	Flanking Active TSS	A549	lung
45	chr10:92689800-92690200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:92689800-92690200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
47	chr10:92689800-92691200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:92689800-92691400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:92689800-92691400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:92689800-92691600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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