Variant report

Variant	rs60570258
Chromosome Location	chr10:92693359-92693360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs41461347	0.83[AMR][1000 genomes]
rs59529525	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084241	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317605	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317612	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317616	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317619	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317624	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317626	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92688400-92699800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:92689400-92695200	Weak transcription	Lung	lung
3	chr10:92690200-92695200	Weak transcription	Spleen	Spleen
4	chr10:92691000-92695200	Weak transcription	Aorta	Aorta
5	chr10:92691200-92695200	Weak transcription	Placenta	Placenta
6	chr10:92691200-92695200	Weak transcription	Left Ventricle	heart
7	chr10:92691200-92697200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:92691400-92694600	Weak transcription	Right Ventricle	heart
9	chr10:92691400-92695000	Enhancers	Dnd41	blood
10	chr10:92691400-92695200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:92691400-92695200	Weak transcription	Fetal Stomach	stomach
12	chr10:92691400-92695400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:92691600-92693600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:92691600-92693600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:92691600-92694400	Enhancers	HepG2	liver
16	chr10:92691600-92695000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:92691600-92695000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:92691600-92695000	Weak transcription	HSMMtube	muscle
19	chr10:92691600-92695200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:92691600-92695200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:92691600-92695200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:92691600-92695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:92691600-92695200	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:92691600-92695200	Weak transcription	Thymus	Thymus
25	chr10:92691600-92695200	Weak transcription	HMEC	breast
26	chr10:92691800-92694000	Enhancers	HUVEC	blood vessel
27	chr10:92691800-92695000	Enhancers	Fetal Heart	heart
28	chr10:92691800-92695000	Weak transcription	Osteobl	bone
29	chr10:92691800-92695200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:92691800-92695200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:92691800-92695200	Weak transcription	Fetal Lung	lung
32	chr10:92691800-92695200	Weak transcription	NH-A	brain
33	chr10:92691800-92695400	Weak transcription	Hela-S3	cervix
34	chr10:92692000-92695200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:92692000-92695400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:92692000-92697000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:92692200-92695200	Weak transcription	NHDF-Ad	bronchial
38	chr10:92692400-92693400	Enhancers	A549	lung
39	chr10:92692400-92695000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr10:92692400-92695000	Weak transcription	NHLF	lung
41	chr10:92692400-92695200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:92692600-92698600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:92692800-92693400	Enhancers	HSMM	muscle
44	chr10:92693200-92696800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:92693200-92697400	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links