Variant report

Variant	rs73317619
Chromosome Location	chr10:92694883-92694884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92689202..92690850-chr10:92693905..92696337,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs41461347	1.00[AMR][1000 genomes]
rs55971695	0.84[AFR][1000 genomes]
rs59529525	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60570258	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7084241	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317605	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317612	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317616	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73317624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73317626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3427114	chr10:92694432-92695004	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92688400-92699800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:92689400-92695200	Weak transcription	Lung	lung
3	chr10:92690200-92695200	Weak transcription	Spleen	Spleen
4	chr10:92691000-92695200	Weak transcription	Aorta	Aorta
5	chr10:92691200-92695200	Weak transcription	Placenta	Placenta
6	chr10:92691200-92695200	Weak transcription	Left Ventricle	heart
7	chr10:92691200-92697200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:92691400-92695000	Enhancers	Dnd41	blood
9	chr10:92691400-92695200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:92691400-92695200	Weak transcription	Fetal Stomach	stomach
11	chr10:92691400-92695400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:92691600-92695000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:92691600-92695000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:92691600-92695000	Weak transcription	HSMMtube	muscle
15	chr10:92691600-92695200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:92691600-92695200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:92691600-92695200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:92691600-92695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:92691600-92695200	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:92691600-92695200	Weak transcription	Thymus	Thymus
21	chr10:92691600-92695200	Weak transcription	HMEC	breast
22	chr10:92691800-92695000	Enhancers	Fetal Heart	heart
23	chr10:92691800-92695000	Weak transcription	Osteobl	bone
24	chr10:92691800-92695200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:92691800-92695200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:92691800-92695200	Weak transcription	Fetal Lung	lung
27	chr10:92691800-92695200	Weak transcription	NH-A	brain
28	chr10:92691800-92695400	Weak transcription	Hela-S3	cervix
29	chr10:92692000-92695200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:92692000-92695400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:92692000-92697000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:92692200-92695200	Weak transcription	NHDF-Ad	bronchial
33	chr10:92692400-92695000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:92692400-92695000	Weak transcription	NHLF	lung
35	chr10:92692400-92695200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:92692600-92698600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:92693200-92696800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:92693200-92697400	Enhancers	Fetal Thymus	thymus
39	chr10:92693400-92695000	Weak transcription	A549	lung
40	chr10:92693600-92695000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:92694000-92695000	Weak transcription	HUVEC	blood vessel
42	chr10:92694400-92695200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:92694400-92696600	Weak transcription	HepG2	liver
44	chr10:92694600-92695800	Active TSS	Right Ventricle	heart
45	chr10:92694800-92695600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
46	chr10:92694800-92698000	Enhancers	HSMM	muscle

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