Variant report

Variant	rs59555371
Chromosome Location	chr3:17977923-17977924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11920544	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044076	1.00[AMR][1000 genomes]
rs4331697	1.00[AMR][1000 genomes]
rs73162006	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9816825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17970200-17984400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:17971200-17978400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:17973600-17980000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:17974200-17978400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:17974400-17979800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:17975200-17980800	Enhancers	Fetal Heart	heart
7	chr3:17975600-17980600	Weak transcription	Dnd41	blood
8	chr3:17975800-17979800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:17976400-17978000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:17977000-17980200	Enhancers	Brain Germinal Matrix	brain
11	chr3:17977200-17978200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:17977600-17978000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:17977600-17978400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:17977600-17979800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:17977600-17979800	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:17977600-17980800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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