Variant report

Variant	rs73162006
Chromosome Location	chr3:17982063-17982064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11920544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044076	1.00[AMR][1000 genomes]
rs4331697	1.00[AMR][1000 genomes]
rs59555371	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73160201	0.81[AFR][1000 genomes]
rs9816825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17970200-17984400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:17978400-17982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:17978600-17983000	Enhancers	Fetal Thymus	thymus
4	chr3:17979000-17983000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:17979800-17982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:17980400-17982600	Weak transcription	Thymus	Thymus
7	chr3:17980400-17987600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:17981200-17983000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:17981200-17983400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:17981200-17983400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:17981400-17986200	Weak transcription	Fetal Heart	heart
12	chr3:17981600-17982800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:17981800-17986000	Weak transcription	Dnd41	blood
14	chr3:17981800-17986600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:17982000-17982200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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