Variant report

Variant	rs17044076
Chromosome Location	chr3:17862595-17862596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10510479	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11920544	1.00[AMR][1000 genomes]
rs17043847	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043853	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043870	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043872	1.00[CEU][hapmap]
rs17043877	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043895	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4331697	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs59555371	1.00[AMR][1000 genomes]
rs73162006	1.00[AMR][1000 genomes]
rs9713998	1.00[AMR][1000 genomes]
rs9816825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17862200-17862600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:17862200-17862600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:17862200-17862600	Enhancers	Dnd41	blood
4	chr3:17862200-17862800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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