Variant report

Variant	rs9713998
Chromosome Location	chr3:17636813-17636814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10510476	1.00[AMR][1000 genomes]
rs10510479	1.00[AMR][1000 genomes]
rs17043520	1.00[AMR][1000 genomes]
rs17043521	1.00[AMR][1000 genomes]
rs17043523	1.00[AMR][1000 genomes]
rs17043525	1.00[AMR][1000 genomes]
rs17043527	1.00[AMR][1000 genomes]
rs17043529	1.00[AMR][1000 genomes]
rs17043562	1.00[AMR][1000 genomes]
rs17043615	1.00[AMR][1000 genomes]
rs17043634	1.00[AMR][1000 genomes]
rs17043847	1.00[AMR][1000 genomes]
rs17043853	1.00[AMR][1000 genomes]
rs17043870	1.00[AMR][1000 genomes]
rs17043877	1.00[AMR][1000 genomes]
rs17043895	1.00[AMR][1000 genomes]
rs17044076	1.00[AMR][1000 genomes]
rs4075644	1.00[AMR][1000 genomes]
rs4331697	1.00[AMR][1000 genomes]
rs4579004	1.00[AMR][1000 genomes]
rs71049202	1.00[AMR][1000 genomes]
rs9756505	1.00[AMR][1000 genomes]
rs9816825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17622200-17638800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:17627800-17638800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:17630600-17637600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:17632400-17637200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:17632400-17637600	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:17632400-17640600	Weak transcription	Pancreas	Pancrea
8	chr3:17632400-17640600	Weak transcription	HSMM	muscle
9	chr3:17632400-17640800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:17632400-17643600	Weak transcription	A549	lung
11	chr3:17632400-17646200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:17632400-17646200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:17632400-17646200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:17632600-17637400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:17633000-17640600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:17633000-17641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:17633000-17667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:17633400-17637800	Weak transcription	Fetal Lung	lung
20	chr3:17633600-17641000	Weak transcription	Spleen	Spleen
21	chr3:17633600-17659600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:17634000-17639200	Weak transcription	Dnd41	blood
24	chr3:17634200-17647600	Weak transcription	Right Ventricle	heart
25	chr3:17634200-17659800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:17635200-17637600	Strong transcription	Primary B cells from cord blood	blood
27	chr3:17636000-17638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:17636000-17639000	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:17636600-17640600	Weak transcription	Primary hematopoietic stem cells	blood

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