Variant report

Variant	rs17043847
Chromosome Location	chr3:17686707-17686708
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:17685317..17686887-chr3:17783169..17785633,3	MCF-7	breast:
2	chr3:17686325..17687848-chr3:17882370..17883316,8	K562	blood:
3	chr3:17686323..17687041-chr3:17852128..17852662,2	MCF-7	breast:
4	chr3:17675340..17678330-chr3:17685687..17687246,2	K562	blood:
5	chr3:17682592..17685089-chr3:17685251..17686866,2	K562	blood:
6	chr3:17681918..17684024-chr3:17685231..17687253,2	MCF-7	breast:
7	chr3:17685895..17687359-chr3:17882432..17883403,5	MCF-7	breast:
8	chr3:17686300..17687006-chr3:17728236..17728848,2	MCF-7	breast:
9	chr3:17686538..17687204-chr7:20296816..20297526,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510479	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12714948	1.00[CEU][hapmap]
rs17043615	1.00[AMR][1000 genomes]
rs17043634	1.00[AMR][1000 genomes]
rs17043853	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043870	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043872	1.00[CEU][hapmap]
rs17043877	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043895	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17044076	1.00[AMR][1000 genomes]
rs4075644	1.00[AMR][1000 genomes]
rs4331697	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4579004	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6795454	1.00[CEU][hapmap]
rs6804323	1.00[CEU][hapmap]
rs71049202	1.00[AMR][1000 genomes]
rs9713998	1.00[AMR][1000 genomes]
rs9754654	1.00[CEU][hapmap]
rs9756505	1.00[AMR][1000 genomes]
rs9816825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17674200-17687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:17677600-17686800	Weak transcription	Small Intestine	intestine
7	chr3:17681400-17689800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:17681600-17686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:17681600-17686800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:17681600-17687000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:17681600-17687000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:17681800-17714400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:17682200-17686800	Weak transcription	NHEK	skin
14	chr3:17683000-17686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:17684000-17687000	Enhancers	HSMM	muscle
16	chr3:17684600-17687000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:17684600-17687200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:17684800-17687000	Enhancers	Osteobl	bone
19	chr3:17685400-17687000	Weak transcription	Brain Substantia Nigra	brain
20	chr3:17685600-17686800	Weak transcription	Brain Germinal Matrix	brain
21	chr3:17685600-17686800	Weak transcription	HSMMtube	muscle
22	chr3:17685800-17686800	Weak transcription	Fetal Lung	lung
23	chr3:17685800-17686800	Weak transcription	A549	lung
24	chr3:17685800-17687000	Weak transcription	Brain Anterior Caudate	brain
25	chr3:17686400-17687000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:17686400-17687000	Enhancers	Liver	Liver
27	chr3:17686600-17687400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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