Variant report

Variant	rs59557526
Chromosome Location	chr7:12349883-12349884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs56885635	1.00[AMR][1000 genomes]
rs57112920	1.00[AMR][1000 genomes]
rs57304050	1.00[AMR][1000 genomes]
rs57811574	1.00[AMR][1000 genomes]
rs57917895	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58060265	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58932362	1.00[AMR][1000 genomes]
rs59243529	1.00[AMR][1000 genomes]
rs59723417	1.00[AMR][1000 genomes]
rs59729608	1.00[AMR][1000 genomes]
rs61732210	1.00[AMR][1000 genomes]
rs6947560	1.00[AMR][1000 genomes]
rs6973155	1.00[AMR][1000 genomes]
rs73290007	1.00[AMR][1000 genomes]
rs73290041	1.00[AMR][1000 genomes]
rs73290439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290443	1.00[AMR][1000 genomes]
rs73290449	1.00[AMR][1000 genomes]
rs73290465	1.00[AMR][1000 genomes]
rs73290474	1.00[AMR][1000 genomes]
rs73290478	1.00[AMR][1000 genomes]
rs73290480	1.00[AMR][1000 genomes]
rs73290485	1.00[AMR][1000 genomes]
rs73290486	1.00[AMR][1000 genomes]
rs73290487	1.00[AMR][1000 genomes]
rs73290490	1.00[AMR][1000 genomes]
rs73290491	1.00[AMR][1000 genomes]
rs73290495	1.00[AMR][1000 genomes]
rs73292103	1.00[AMR][1000 genomes]
rs73292131	1.00[AMR][1000 genomes]
rs73292142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292146	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292356	1.00[AMR][1000 genomes]
rs73292359	1.00[AMR][1000 genomes]
rs73292361	1.00[AMR][1000 genomes]
rs73292363	1.00[AMR][1000 genomes]
rs73292365	1.00[AMR][1000 genomes]
rs73292368	1.00[AMR][1000 genomes]
rs73292371	1.00[AMR][1000 genomes]
rs73292378	1.00[AMR][1000 genomes]
rs73292380	1.00[AMR][1000 genomes]
rs73292382	1.00[AMR][1000 genomes]
rs73292385	1.00[AMR][1000 genomes]
rs73292386	1.00[AMR][1000 genomes]
rs73292388	1.00[AMR][1000 genomes]
rs73292390	1.00[AMR][1000 genomes]
rs73292392	1.00[AMR][1000 genomes]
rs73292394	1.00[AMR][1000 genomes]
rs73292397	1.00[AMR][1000 genomes]
rs73292400	1.00[AMR][1000 genomes]
rs73292402	1.00[AMR][1000 genomes]
rs73294303	1.00[AMR][1000 genomes]
rs73294304	1.00[AMR][1000 genomes]
rs73294306	1.00[AMR][1000 genomes]
rs73294368	1.00[AMR][1000 genomes]
rs73294372	1.00[AMR][1000 genomes]
rs73294373	1.00[AMR][1000 genomes]
rs73294376	1.00[AMR][1000 genomes]
rs73294382	1.00[AMR][1000 genomes]
rs73294384	1.00[AMR][1000 genomes]
rs73294385	1.00[AMR][1000 genomes]
rs73294387	1.00[AMR][1000 genomes]
rs73294389	1.00[AMR][1000 genomes]
rs73294391	1.00[AMR][1000 genomes]
rs73294398	1.00[AMR][1000 genomes]
rs73294402	1.00[AMR][1000 genomes]
rs73296303	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296306	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296326	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296504	1.00[AMR][1000 genomes]
rs73296510	1.00[AMR][1000 genomes]
rs73296513	1.00[AMR][1000 genomes]
rs73296514	1.00[AMR][1000 genomes]
rs73296522	1.00[AMR][1000 genomes]
rs73296587	1.00[AMR][1000 genomes]
rs73296594	1.00[AMR][1000 genomes]
rs73298516	1.00[AMR][1000 genomes]
rs73298518	1.00[AMR][1000 genomes]
rs73298519	1.00[AMR][1000 genomes]
rs73298525	1.00[AMR][1000 genomes]
rs73300507	1.00[AMR][1000 genomes]
rs73300513	1.00[AMR][1000 genomes]
rs73300530	1.00[AMR][1000 genomes]
rs73300539	1.00[AMR][1000 genomes]
rs73301009	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034059	chr7:12342549-12367818	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12338400-12359200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:12339600-12360000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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