Variant report

Variant	rs73290449
Chromosome Location	chr7:12360313-12360314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12359587..12361942-chr7:12364993..12366787,2	K562	blood:
2	chr7:12359785..12361369-chr7:12363361..12365480,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VWDE-5	chr7:12360180-12360643	expReg_chr7_1116_-

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs56885635	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57112920	1.00[AMR][1000 genomes]
rs57304050	1.00[AMR][1000 genomes]
rs57811574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57917895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58060265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58932362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59243529	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59557526	1.00[AMR][1000 genomes]
rs59723417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59729608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947560	1.00[AMR][1000 genomes]
rs6973155	1.00[AMR][1000 genomes]
rs73290007	1.00[AMR][1000 genomes]
rs73290041	1.00[AMR][1000 genomes]
rs73290439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290443	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290457	0.93[AFR][1000 genomes]
rs73290465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290480	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290487	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290490	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290491	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290495	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292103	1.00[AMR][1000 genomes]
rs73292131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292146	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292359	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292365	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292368	1.00[AMR][1000 genomes]
rs73292371	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292373	0.87[AFR][1000 genomes]
rs73292377	0.96[AFR][1000 genomes]
rs73292378	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292386	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292388	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292394	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292397	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294372	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294373	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294391	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294398	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296303	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296306	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296514	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296522	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296587	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296594	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298516	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298518	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300507	1.00[AMR][1000 genomes]
rs73300513	1.00[AMR][1000 genomes]
rs73300530	1.00[AMR][1000 genomes]
rs73300539	1.00[AMR][1000 genomes]
rs73301009	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1034059	chr7:12342549-12367818	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1029941	chr7:12351595-12444490	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv433030	chr7:12352210-12443042	Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1034475	chr7:12352210-12444490	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1029098	chr7:12354108-12443042	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12351000-12367600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:12352200-12360600	Weak transcription	K562	blood
3	chr7:12354400-12405000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:12354800-12364800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:12358000-12361800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:12360000-12360400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:12360000-12362400	Enhancers	A549	lung
8	chr7:12360200-12360400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:12360200-12360400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:12360200-12361000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links