Variant report

Variant	rs73292142
Chromosome Location	chr7:12328799-12328800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs56885635	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57112920	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57304050	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57811574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57917895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58060265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58932362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59243529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59557526	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59723417	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59729608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947560	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973155	1.00[AMR][1000 genomes]
rs73290007	1.00[AMR][1000 genomes]
rs73290041	1.00[AMR][1000 genomes]
rs73290439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290443	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290457	0.86[AFR][1000 genomes]
rs73290465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290486	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290487	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290490	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290491	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290495	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292103	1.00[AMR][1000 genomes]
rs73292131	1.00[AMR][1000 genomes]
rs73292146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292356	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292359	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292365	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292368	1.00[AMR][1000 genomes]
rs73292371	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292373	0.87[AFR][1000 genomes]
rs73292377	0.90[AFR][1000 genomes]
rs73292378	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292380	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292386	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292388	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292390	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292394	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292397	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294304	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294372	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294373	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294391	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294398	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296514	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296522	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296587	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296594	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298518	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298601	0.82[AFR][1000 genomes]
rs73300507	1.00[AMR][1000 genomes]
rs73300513	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300530	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300539	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301009	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887629	chr7:12304555-12400837	ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019021	chr7:12310445-12375516	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv887630	chr7:12323757-12400837	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12317800-12329400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:12328600-12328800	Enhancers	Brain Germinal Matrix	brain

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