Variant report

Variant	rs59582425
Chromosome Location	chr12:10719291-10719292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1003029	1.00[ASN][1000 genomes]
rs1124164	1.00[ASN][1000 genomes]
rs11829102	1.00[ASN][1000 genomes]
rs11830025	1.00[ASN][1000 genomes]
rs11834676	1.00[ASN][1000 genomes]
rs12370025	1.00[ASN][1000 genomes]
rs16915589	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921917	1.00[ASN][1000 genomes]
rs16922006	1.00[ASN][1000 genomes]
rs16922007	1.00[ASN][1000 genomes]
rs16922807	1.00[ASN][1000 genomes]
rs4280083	1.00[ASN][1000 genomes]
rs4763206	1.00[ASN][1000 genomes]
rs4763207	1.00[ASN][1000 genomes]
rs4763560	1.00[ASN][1000 genomes]
rs4763561	1.00[ASN][1000 genomes]
rs55706835	0.85[AMR][1000 genomes]
rs58898379	0.93[AMR][1000 genomes]
rs59816952	0.85[AMR][1000 genomes]
rs7309605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73252010	0.86[AMR][1000 genomes]
rs73252011	0.86[AMR][1000 genomes]
rs73252012	0.86[AMR][1000 genomes]
rs73252013	0.86[AMR][1000 genomes]
rs73252057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73254032	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73256073	1.00[ASN][1000 genomes]
rs73256078	1.00[ASN][1000 genomes]
rs73256092	1.00[ASN][1000 genomes]
rs73257957	1.00[ASN][1000 genomes]
rs73257964	1.00[ASN][1000 genomes]
rs73257985	1.00[ASN][1000 genomes]
rs73257988	1.00[ASN][1000 genomes]
rs73262002	1.00[ASN][1000 genomes]
rs73266202	0.86[AMR][1000 genomes]
rs73268205	0.86[AMR][1000 genomes]
rs73268207	0.86[AMR][1000 genomes]
rs73268209	0.86[AMR][1000 genomes]
rs73268211	0.86[AMR][1000 genomes]
rs73268213	0.86[AMR][1000 genomes]
rs73268214	0.86[AMR][1000 genomes]
rs73268219	0.86[AMR][1000 genomes]
rs73268220	0.86[AMR][1000 genomes]
rs74060420	0.86[AMR][1000 genomes]
rs7952776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955193	1.00[ASN][1000 genomes]
rs7955402	1.00[ASN][1000 genomes]
rs7957198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7958146	1.00[ASN][1000 genomes]
rs7958230	1.00[ASN][1000 genomes]
rs7958735	1.00[ASN][1000 genomes]
rs7959470	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7959753	0.93[AMR][1000 genomes]
rs7962734	0.85[AMR][1000 genomes]
rs7964590	1.00[ASN][1000 genomes]
rs7969057	1.00[ASN][1000 genomes]
rs7972993	0.85[AMR][1000 genomes]
rs7973255	1.00[ASN][1000 genomes]
rs7974801	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7975390	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7976533	1.00[ASN][1000 genomes]
rs7978122	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv557459	chr12:10560591-10729821	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv898772	chr12:10622047-10722585	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv557479	chr12:10644663-10729821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv898773	chr12:10660850-10722585	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv898774	chr12:10666025-10722585	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv898775	chr12:10668694-10735786	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10710800-10724800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:10714000-10733200	Weak transcription	Primary T cells from cord blood	blood
3	chr12:10716800-10723800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:10717800-10721600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:10719200-10719600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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