Variant report

Variant	rs59584726
Chromosome Location	chr10:5466847-5466848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5453986..5456689-chr10:5465095..5468589,3	MCF-7	breast:
2	chr10:5462985..5465023-chr10:5466029..5468150,2	MCF-7	breast:
3	chr10:5453373..5456092-chr10:5463643..5467597,4	MCF-7	breast:
4	chr10:5457393..5460013-chr10:5463860..5467681,4	K562	blood:
5	chr10:5464733..5467378-chr10:5467416..5470829,5	K562	blood:

Variant related genes	Relation type
ENSG00000173848	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10450530	1.00[AMR][1000 genomes]
rs10450531	1.00[AMR][1000 genomes]
rs4242793	1.00[AMR][1000 genomes]
rs4415657	1.00[AMR][1000 genomes]
rs4880730	1.00[AMR][1000 genomes]
rs56724201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56959063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58833507	1.00[AMR][1000 genomes]
rs59841593	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60653996	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904871	1.00[AMR][1000 genomes]
rs7922103	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9423432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1045141	chr10:5450244-5491959	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv831774	chr10:5463556-5657421	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5455400-5475200	Weak transcription	Left Ventricle	heart
2	chr10:5455600-5469400	Weak transcription	Fetal Thymus	thymus
3	chr10:5455800-5488000	Weak transcription	Fetal Kidney	kidney
4	chr10:5456000-5473000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:5459200-5470000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:5459200-5476200	Weak transcription	Thymus	Thymus
7	chr10:5459400-5467200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:5459400-5467600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:5459400-5470000	Weak transcription	Fetal Stomach	stomach
10	chr10:5459400-5473200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:5459400-5473200	Weak transcription	Psoas Muscle	Psoas
12	chr10:5459400-5480800	Weak transcription	Gastric	stomach
13	chr10:5459400-5481400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:5459400-5482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:5459400-5483200	Weak transcription	Pancreas	Pancrea
16	chr10:5459400-5488600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:5460800-5471200	Weak transcription	Liver	Liver
18	chr10:5461400-5467200	Weak transcription	Dnd41	blood
19	chr10:5461400-5468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:5462000-5467200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:5462000-5469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:5464000-5468800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:5464600-5469800	Weak transcription	Fetal Lung	lung
24	chr10:5465200-5467000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:5465200-5473400	Weak transcription	HepG2	liver
26	chr10:5465400-5467000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:5465600-5467600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr10:5465600-5467800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr10:5465600-5467800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr10:5465600-5467800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr10:5465800-5467400	Enhancers	HUVEC	blood vessel
32	chr10:5465800-5469400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:5465800-5469400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:5466200-5467000	Enhancers	NHDF-Ad	bronchial
35	chr10:5466200-5467200	Strong transcription	A549	lung
36	chr10:5466200-5467400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:5466200-5467600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:5466200-5467800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:5466200-5467800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr10:5466200-5467800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:5466200-5468600	Weak transcription	HMEC	breast
42	chr10:5466200-5473200	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:5466400-5467000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:5466400-5467200	Enhancers	Brain Anterior Caudate	brain
45	chr10:5466400-5469400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr10:5466400-5469400	Weak transcription	Osteobl	bone
47	chr10:5466400-5471400	Weak transcription	HSMM	muscle
48	chr10:5466400-5475400	Weak transcription	Adipose Nuclei	Adipose
49	chr10:5466600-5467800	Enhancers	H9 Cell Line	embryonic stem cell
50	chr10:5466600-5469600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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