Variant report

Variant	rs7904871
Chromosome Location	chr10:5359878-5359879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5348843..5350964-chr10:5358085..5359902,2	K562	blood:
2	chr10:5355691..5358154-chr10:5359836..5362868,3	K562	blood:
3	chr10:5353264..5355608-chr10:5357998..5359884,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10450530	1.00[AMR][1000 genomes]
rs10450531	1.00[AMR][1000 genomes]
rs34030369	1.00[AMR][1000 genomes]
rs34463109	1.00[AMR][1000 genomes]
rs4242793	1.00[AMR][1000 genomes]
rs4415657	1.00[AMR][1000 genomes]
rs4880730	1.00[AMR][1000 genomes]
rs56724201	1.00[AMR][1000 genomes]
rs56959063	1.00[AMR][1000 genomes]
rs59584726	1.00[AMR][1000 genomes]
rs59841593	1.00[AMR][1000 genomes]
rs60653996	1.00[AMR][1000 genomes]
rs61208564	1.00[AMR][1000 genomes]
rs73603522	1.00[AMR][1000 genomes]
rs73603573	1.00[AMR][1000 genomes]
rs7922103	1.00[AMR][1000 genomes]
rs9423432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5358200-5360400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:5358200-5360400	Enhancers	NHEK	skin
3	chr10:5358400-5360600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr10:5358600-5360200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:5358600-5360400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:5358600-5360400	Enhancers	HMEC	breast
7	chr10:5358600-5360800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr10:5358600-5361200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:5358800-5360400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:5358800-5360400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:5358800-5360600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:5358800-5360800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:5359000-5360400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:5359000-5360400	Enhancers	A549	lung
15	chr10:5359000-5360800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:5359000-5360800	Enhancers	Fetal Thymus	thymus
17	chr10:5359200-5360200	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:5359200-5360200	Flanking Active TSS	Dnd41	blood
19	chr10:5359200-5360200	Enhancers	Hela-S3	cervix
20	chr10:5359200-5360200	Enhancers	HSMM	muscle
21	chr10:5359200-5360200	Enhancers	HUVEC	blood vessel
22	chr10:5359200-5360400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:5359200-5360400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:5359200-5360400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:5359200-5360400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:5359200-5360400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:5359200-5360400	Bivalent Enhancer	HepG2	liver
28	chr10:5359200-5360400	Enhancers	HSMMtube	muscle
29	chr10:5359200-5360400	Enhancers	K562	blood
30	chr10:5359200-5360400	Enhancers	NHDF-Ad	bronchial
31	chr10:5359200-5360400	Enhancers	Osteobl	bone
32	chr10:5359200-5360600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr10:5359200-5361000	Enhancers	Thymus	Thymus
34	chr10:5359200-5362800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr10:5359400-5360000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:5359400-5360000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:5359400-5360000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:5359400-5360000	Enhancers	Fetal Muscle Trunk	muscle
39	chr10:5359400-5360200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:5359400-5360200	Enhancers	Esophagus	oesophagus
41	chr10:5359400-5360200	Enhancers	NHLF	lung
42	chr10:5359400-5360400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:5359400-5360400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:5359400-5360400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr10:5359400-5360400	Enhancers	NH-A	brain
46	chr10:5359400-5360600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr10:5359400-5361600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:5359600-5360000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:5359600-5360000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:5359600-5360000	Enhancers	Primary T helper cells PMA-I stimulated	--

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