Variant report

Variant	rs7922103
Chromosome Location	chr10:5402424-5402425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr10:5402291-5402620	A549	lung:	n/a	n/a
2	SP1	chr10:5402171-5402941	A549	lung:	n/a	n/a
3	TCF12	chr10:5402070-5403025	A549	lung:	n/a	n/a
4	FOXA2	chr10:5402203-5402918	A549	lung:	n/a	n/a
5	FOXA1	chr10:5402268-5402563	HepG2	liver:	n/a	n/a
6	EP300	chr10:5402225-5402932	A549	lung:	n/a	n/a
7	EP300	chr10:5402163-5402932	A549	lung:	n/a	n/a
8	REST	chr10:5402180-5402918	A549	lung:	n/a	n/a
9	FOSL2	chr10:5402254-5402839	A549	lung:	n/a	n/a
10	FOXA1	chr10:5402314-5402513	T-47D	breast:	n/a	n/a
11	GATA3	chr10:5402143-5402969	A549	lung:	n/a	n/a
12	SP1	chr10:5402196-5402858	A549	lung:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5401366..5402923-chr10:5404945..5407077,2	K562	blood:
2	chr10:5401423..5403720-chr10:5404085..5406445,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10450530	1.00[AMR][1000 genomes]
rs10450531	1.00[AMR][1000 genomes]
rs34030369	1.00[AMR][1000 genomes]
rs34463109	1.00[AMR][1000 genomes]
rs4242793	1.00[AMR][1000 genomes]
rs4415657	1.00[AMR][1000 genomes]
rs4880730	1.00[AMR][1000 genomes]
rs56724201	1.00[AMR][1000 genomes]
rs56959063	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58833507	1.00[AMR][1000 genomes]
rs59584726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59841593	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60653996	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603573	1.00[AMR][1000 genomes]
rs7904871	1.00[AMR][1000 genomes]
rs9423432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5401600-5402600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr10:5401800-5402600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:5401800-5402800	Flanking Active TSS	A549	lung
4	chr10:5402000-5403000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr10:5402200-5402600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:5402200-5402800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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