Variant report

Variant	rs59596201
Chromosome Location	chr6:37618427-37618428
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57466008	1.00[AMR][1000 genomes]
rs73413382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413388	0.98[AFR][1000 genomes]
rs73413392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413396	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730779	1.00[AMR][1000 genomes]
rs73734244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv10458	chr6:37616371-37618598	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37599200-37621800	Weak transcription	NHLF	lung
2	chr6:37612600-37619800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:37614200-37621800	Weak transcription	Aorta	Aorta
4	chr6:37616800-37619600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:37617000-37620200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:37617200-37619600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:37617200-37619600	Weak transcription	Ovary	ovary
8	chr6:37617200-37619600	Weak transcription	Right Atrium	heart
9	chr6:37617200-37621600	Weak transcription	Esophagus	oesophagus
10	chr6:37617200-37622400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:37617400-37618800	Bivalent Enhancer	Fetal Heart	heart
12	chr6:37618000-37621800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:37618200-37619600	Weak transcription	Left Ventricle	heart
14	chr6:37618200-37621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:37618200-37631600	Weak transcription	Gastric	stomach
16	chr6:37618400-37622000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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