Variant report

Variant	rs73734244
Chromosome Location	chr6:37659858-37659859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37333349..37334187-chr6:37659540..37660476,2	K562	blood:
2	chr6:37506023..37506547-chr6:37659493..37660057,3	K562	blood:
3	chr6:37548378..37549515-chr6:37659025..37660397,9	MCF-7	breast:
4	chr6:37533861..37534723-chr6:37659470..37659989,2	MCF-7	breast:
5	chr6:37575151..37576143-chr6:37659703..37660395,3	MCF-7	breast:
6	chr6:37658676..37660693-chr6:37667722..37669434,2	MCF-7	breast:
7	chr6:37575707..37576424-chr6:37659467..37660061,2	MCF-7	breast:
8	chr6:37293616..37294200-chr6:37659485..37660539,3	K562	blood:
9	chr6:37451749..37453010-chr6:37659528..37660589,3	MCF-7	breast:
10	chr6:37548439..37549269-chr6:37659361..37660357,2	MCF-7	breast:
11	chr6:37505637..37506607-chr6:37659097..37660191,6	MCF-7	breast:
12	chr6:37548312..37548991-chr6:37659068..37660023,2	K562	blood:
13	chr6:37533836..37534804-chr6:37659393..37660358,2	MCF-7	breast:
14	chr6:37451621..37453221-chr6:37659409..37660540,11	MCF-7	breast:
15	chr6:37465876..37467537-chr6:37659500..37661508,2	K562	blood:
16	chr6:37658640..37662979-chr6:37663230..37666223,3	MCF-7	breast:
17	chr6:37349391..37350028-chr6:37659594..37660222,2	MCF-7	breast:
18	chr6:37349041..37349984-chr6:37659855..37660388,2	K562	blood:
19	chr6:37451632..37452946-chr6:37659336..37660499,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59596201	1.00[AMR][1000 genomes]
rs73413382	1.00[AMR][1000 genomes]
rs73413392	1.00[AMR][1000 genomes]
rs73413396	1.00[AMR][1000 genomes]
rs9462347	1.00[EUR][1000 genomes]
rs9462349	1.00[EUR][1000 genomes]
rs9462350	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37652600-37663600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:37653400-37660000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:37655600-37662800	Enhancers	Fetal Brain Male	brain
4	chr6:37657600-37663600	Weak transcription	Pancreas	Pancrea
5	chr6:37658600-37660600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:37658800-37660000	Enhancers	Osteobl	bone
7	chr6:37658800-37660200	Enhancers	NHDF-Ad	bronchial
8	chr6:37658800-37663600	Weak transcription	Right Atrium	heart
9	chr6:37659000-37660000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:37659000-37660000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:37659000-37660000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:37659000-37660000	Enhancers	Brain Hippocampus Middle	brain
13	chr6:37659000-37660000	Enhancers	NHEK	skin
14	chr6:37659000-37660200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37659000-37660200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:37659000-37660200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:37659000-37660200	Enhancers	Brain Substantia Nigra	brain
18	chr6:37659000-37660200	Enhancers	NHLF	lung
19	chr6:37659200-37660000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:37659200-37660000	Enhancers	HSMM	muscle
21	chr6:37659200-37660000	Enhancers	NH-A	brain
22	chr6:37659200-37660200	Enhancers	HMEC	breast
23	chr6:37659400-37660000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:37659400-37660000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:37659400-37660000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:37659400-37660000	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:37659400-37660200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:37659400-37660200	Enhancers	A549	lung
29	chr6:37659600-37660000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:37659600-37660000	Enhancers	Brain Germinal Matrix	brain
31	chr6:37659600-37660000	Enhancers	Fetal Brain Female	brain
32	chr6:37659600-37660200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:37659600-37660200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:37659600-37660200	Enhancers	Esophagus	oesophagus
35	chr6:37659600-37660200	Bivalent Enhancer	Placenta	Placenta
36	chr6:37659600-37660200	Enhancers	Ovary	ovary
37	chr6:37659600-37660200	Enhancers	Stomach Smooth Muscle	stomach
38	chr6:37659600-37660600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:37659800-37660000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:37659800-37660000	Bivalent Enhancer	Fetal Stomach	stomach
41	chr6:37659800-37660000	Enhancers	Placenta Amnion	Placenta Amnion
42	chr6:37659800-37660200	Enhancers	Primary B cells from peripheral blood	blood
43	chr6:37659800-37660200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr6:37659800-37660200	Bivalent Enhancer	Fetal Muscle Leg	muscle
45	chr6:37659800-37660400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:37659800-37660600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
47	chr6:37659800-37663000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:37659800-37663000	Weak transcription	Brain Anterior Caudate	brain
49	chr6:37659800-37663200	Weak transcription	Brain Angular Gyrus	brain

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