Variant report

Variant	rs73413382
Chromosome Location	chr6:37621414-37621415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37483817..37486098-chr6:37619708..37622171,2	MCF-7	breast:
2	chr6:37621058..37622661-chr6:37631896..37634535,2	K562	blood:
3	chr6:37615983..37618953-chr6:37619587..37621551,3	K562	blood:
4	chr6:37619715..37621661-chr6:37639970..37641510,2	K562	blood:
5	chr6:37618578..37621552-chr6:37642899..37645409,2	K562	blood:

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57466008	1.00[AMR][1000 genomes]
rs59596201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413388	1.00[AFR][1000 genomes]
rs73413392	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730779	1.00[AMR][1000 genomes]
rs73734244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37599200-37621800	Weak transcription	NHLF	lung
2	chr6:37614200-37621800	Weak transcription	Aorta	Aorta
3	chr6:37617200-37621600	Weak transcription	Esophagus	oesophagus
4	chr6:37617200-37622400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:37618000-37621800	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:37618200-37621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:37618200-37631600	Weak transcription	Gastric	stomach
8	chr6:37618400-37622000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:37618800-37621800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:37618800-37622000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:37618800-37622000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:37620000-37622000	Weak transcription	Ovary	ovary
13	chr6:37620200-37621800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:37620200-37622400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:37620200-37632200	Weak transcription	Right Atrium	heart
16	chr6:37620400-37622000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:37621200-37621800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:37621200-37627400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:37621400-37630800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:37621400-37630800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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