Variant report

Variant	rs5960697
Chromosome Location	chrX:56369779-56369780
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752678	chrX:55930768-56851953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2753382	chrX:55930768-56851953	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2754448	chrX:55930768-56851953	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755974	chrX:55930768-56851953	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv432333	chrX:55930768-56851953	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2756104	chrX:56292362-56824154	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv534648	chrX:56306570-56395419	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3392306	chrX:56342980-56430729	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv3350483	chrX:56342980-56445360	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv524276	chrX:56369721-56443313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:56368000-56370400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:56368400-56371000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chrX:56368400-56371200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chrX:56368600-56372200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chrX:56368800-56370200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chrX:56368800-56370600	Enhancers	Primary T cells fromperipheralblood	blood
7	chrX:56369000-56370200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chrX:56369000-56371000	Enhancers	Dnd41	blood
9	chrX:56369000-56372800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chrX:56369000-56373000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chrX:56369200-56370600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chrX:56369200-56371000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chrX:56369200-56371600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chrX:56369400-56369800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chrX:56369400-56370400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chrX:56369400-56370600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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