Variant report

Variant	rs59621909
Chromosome Location	chr11:73664260-73664261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1051090	0.82[EUR][1000 genomes]
rs11824294	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262	0.80[EUR][1000 genomes]
rs12786008	0.82[EUR][1000 genomes]
rs12786118	0.84[EUR][1000 genomes]
rs12787838	0.86[EUR][1000 genomes]
rs12790445	0.88[EUR][1000 genomes]
rs12790985	0.94[EUR][1000 genomes]
rs12791050	0.86[EUR][1000 genomes]
rs12791617	0.82[EUR][1000 genomes]
rs12791811	0.82[EUR][1000 genomes]
rs12792711	0.86[EUR][1000 genomes]
rs12793555	0.86[EUR][1000 genomes]
rs12793757	0.86[EUR][1000 genomes]
rs12793826	0.82[EUR][1000 genomes]
rs12794180	0.82[EUR][1000 genomes]
rs12795047	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795932	0.86[EUR][1000 genomes]
rs12799686	0.90[EUR][1000 genomes]
rs12799720	0.94[EUR][1000 genomes]
rs12799745	0.84[EUR][1000 genomes]
rs12799764	0.92[EUR][1000 genomes]
rs12801553	0.86[EUR][1000 genomes]
rs12801713	0.82[EUR][1000 genomes]
rs12802082	0.80[EUR][1000 genomes]
rs12804010	0.82[EUR][1000 genomes]
rs12804029	0.90[EUR][1000 genomes]
rs12804511	0.94[EUR][1000 genomes]
rs12808007	0.86[EUR][1000 genomes]
rs12808395	0.82[EUR][1000 genomes]
rs17132419	0.80[EUR][1000 genomes]
rs17244692	0.86[EUR][1000 genomes]
rs17310423	0.82[EUR][1000 genomes]
rs34217459	0.86[EUR][1000 genomes]
rs34258880	0.86[EUR][1000 genomes]
rs34260000	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289118	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34308910	0.86[EUR][1000 genomes]
rs34433535	0.82[EUR][1000 genomes]
rs34475888	0.82[EUR][1000 genomes]
rs34476415	0.82[EUR][1000 genomes]
rs34481167	0.86[EUR][1000 genomes]
rs34527298	0.82[EUR][1000 genomes]
rs34578576	0.90[EUR][1000 genomes]
rs34590823	0.92[EUR][1000 genomes]
rs34659829	0.90[EUR][1000 genomes]
rs34664984	0.94[EUR][1000 genomes]
rs35066247	0.86[EUR][1000 genomes]
rs35123949	0.90[EUR][1000 genomes]
rs35208638	0.86[EUR][1000 genomes]
rs35248853	0.86[EUR][1000 genomes]
rs35277500	0.94[EUR][1000 genomes]
rs35344902	0.86[EUR][1000 genomes]
rs35349379	0.94[EUR][1000 genomes]
rs35414679	0.94[EUR][1000 genomes]
rs35465898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35481171	0.86[EUR][1000 genomes]
rs35531604	0.81[EUR][1000 genomes]
rs35598792	0.90[EUR][1000 genomes]
rs35645696	0.82[EUR][1000 genomes]
rs35683504	0.82[EUR][1000 genomes]
rs35695385	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35741071	0.84[EUR][1000 genomes]
rs35876082	0.94[EUR][1000 genomes]
rs35953544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976844	0.86[EUR][1000 genomes]
rs35991676	0.82[EUR][1000 genomes]
rs36034275	0.82[EUR][1000 genomes]
rs36076594	0.86[EUR][1000 genomes]
rs3758930	0.86[EUR][1000 genomes]
rs55677926	0.80[EUR][1000 genomes]
rs55740271	0.82[EUR][1000 genomes]
rs55788830	0.94[EUR][1000 genomes]
rs55798481	0.94[EUR][1000 genomes]
rs55850940	0.82[EUR][1000 genomes]
rs55987259	0.82[EUR][1000 genomes]
rs56034488	0.94[EUR][1000 genomes]
rs56186807	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57736748	0.86[EUR][1000 genomes]
rs58199491	0.90[EUR][1000 genomes]
rs58541937	0.90[AMR][1000 genomes]
rs60918915	0.80[EUR][1000 genomes]
rs61197259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592539	0.82[EUR][1000 genomes]
rs6592540	0.82[EUR][1000 genomes]
rs6592541	0.90[EUR][1000 genomes]
rs7105778	0.82[EUR][1000 genomes]
rs7113309	0.82[EUR][1000 genomes]
rs7114235	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114340	0.90[EUR][1000 genomes]
rs7119014	0.82[EUR][1000 genomes]
rs7119242	0.82[EUR][1000 genomes]
rs7122091	0.92[ASN][1000 genomes]
rs7122397	0.86[EUR][1000 genomes]
rs7123227	0.88[EUR][1000 genomes]
rs7123766	0.82[EUR][1000 genomes]
rs7124461	0.82[EUR][1000 genomes]
rs7124674	0.82[EUR][1000 genomes]
rs71464087	0.86[EUR][1000 genomes]
rs71464088	0.84[EUR][1000 genomes]
rs71464089	0.86[EUR][1000 genomes]
rs71464091	0.86[EUR][1000 genomes]
rs71464094	0.80[EUR][1000 genomes]
rs71464095	0.88[EUR][1000 genomes]
rs71464096	0.90[EUR][1000 genomes]
rs71464098	0.94[EUR][1000 genomes]
rs71464099	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71479561	0.82[EUR][1000 genomes]
rs71479562	0.82[EUR][1000 genomes]
rs71479563	0.82[EUR][1000 genomes]
rs71479564	0.82[EUR][1000 genomes]
rs71479565	0.82[EUR][1000 genomes]
rs7924403	0.80[EUR][1000 genomes]
rs7926479	0.80[EUR][1000 genomes]
rs7926863	0.86[EUR][1000 genomes]
rs7932961	0.82[EUR][1000 genomes]
rs7937252	0.88[EUR][1000 genomes]
rs7940614	0.90[EUR][1000 genomes]
rs7944702	0.84[EUR][1000 genomes]
rs7944901	0.82[EUR][1000 genomes]
rs7944908	0.82[EUR][1000 genomes]
rs7946245	0.82[EUR][1000 genomes]
rs7951088	0.82[EUR][1000 genomes]
rs7951315	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
3	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:73660600-73667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:73662400-73667000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:73662400-73667000	Weak transcription	NH-A	brain
9	chr11:73662400-73668200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:73663200-73667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:73663400-73670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73663600-73667000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:73663800-73667000	Weak transcription	HSMM	muscle
14	chr11:73664000-73665000	Active TSS	HepG2	liver
15	chr11:73664000-73667000	Weak transcription	HSMMtube	muscle
16	chr11:73664200-73664400	Enhancers	Colonic Mucosa	Colon

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