Variant report

Variant	rs59630789
Chromosome Location	chr9:95924148-95924149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95922407..95924638-chr9:96036435..96038460,2	MCF-7	breast:
2	chr9:95922249..95924729-chr9:95929251..95932279,4	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10119816	0.86[EUR][1000 genomes]
rs56311541	0.86[EUR][1000 genomes]
rs58228786	0.82[EUR][1000 genomes]
rs58965550	0.86[EUR][1000 genomes]
rs61250546	0.86[AFR][1000 genomes]
rs7035727	0.86[EUR][1000 genomes]
rs73651371	1.00[EUR][1000 genomes]
rs73651377	0.82[EUR][1000 genomes]
rs73651379	0.82[EUR][1000 genomes]
rs73651380	0.82[EUR][1000 genomes]
rs73651381	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95913400-95929000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:95919000-95925000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:95922000-95925400	Enhancers	Fetal Brain Male	brain
5	chr9:95922000-95925400	Enhancers	Fetal Stomach	stomach
6	chr9:95922200-95925600	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:95922200-95925600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:95922400-95924200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:95922400-95924200	Weak transcription	Brain Anterior Caudate	brain
10	chr9:95922400-95930600	Weak transcription	Right Ventricle	heart
11	chr9:95922600-95924200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:95922600-95925200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:95922800-95925600	Enhancers	Brain Germinal Matrix	brain
14	chr9:95923000-95930600	Weak transcription	Pancreas	Pancrea
15	chr9:95923200-95924200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:95923200-95924200	Weak transcription	Brain Substantia Nigra	brain
17	chr9:95923200-95924200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:95923200-95924200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:95923400-95924600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:95923400-95925400	Enhancers	Fetal Brain Female	brain
21	chr9:95923400-95925400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:95923600-95924600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:95923600-95925600	Enhancers	Fetal Lung	lung
24	chr9:95924000-95924200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:95924000-95924800	Enhancers	Brain Hippocampus Middle	brain
26	chr9:95924000-95925200	Enhancers	Fetal Heart	heart
27	chr9:95924000-95925400	Enhancers	Cortex derived primary cultured neurospheres	brain

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