Variant report

Variant	rs73651371
Chromosome Location	chr9:95925349-95925350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10119816	0.86[EUR][1000 genomes]
rs3847306	0.87[AMR][1000 genomes]
rs56311541	0.86[EUR][1000 genomes]
rs58228786	0.82[EUR][1000 genomes]
rs58965550	0.86[EUR][1000 genomes]
rs59630789	1.00[EUR][1000 genomes]
rs60316441	1.00[AMR][1000 genomes]
rs60666402	1.00[AFR][1000 genomes]
rs7025060	1.00[AFR][1000 genomes]
rs7035727	0.86[EUR][1000 genomes]
rs73651377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73651379	0.82[EUR][1000 genomes]
rs73651380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73651381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95913400-95929000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:95922000-95925400	Enhancers	Fetal Brain Male	brain
4	chr9:95922000-95925400	Enhancers	Fetal Stomach	stomach
5	chr9:95922200-95925600	Enhancers	Fetal Muscle Trunk	muscle
6	chr9:95922200-95925600	Enhancers	Fetal Muscle Leg	muscle
7	chr9:95922400-95930600	Weak transcription	Right Ventricle	heart
8	chr9:95922800-95925600	Enhancers	Brain Germinal Matrix	brain
9	chr9:95923000-95930600	Weak transcription	Pancreas	Pancrea
10	chr9:95923400-95925400	Enhancers	Fetal Brain Female	brain
11	chr9:95923400-95925400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr9:95923600-95925600	Enhancers	Fetal Lung	lung
13	chr9:95924000-95925400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:95924200-95925400	Enhancers	Brain Anterior Caudate	brain
15	chr9:95924200-95925600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:95924200-95925600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:95924600-95925600	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:95924600-95930800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:95924800-95929400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:95925000-95925400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:95925000-95933800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:95925200-95925400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:95925200-95929400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:95925200-95930200	Weak transcription	Left Ventricle	heart

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