Variant report

Variant	rs7035727
Chromosome Location	chr9:95936050-95936051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10119816	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111776	0.84[AMR][1000 genomes]
rs12684392	0.84[AMR][1000 genomes]
rs1891970	0.84[AMR][1000 genomes]
rs2169756	0.84[AMR][1000 genomes]
rs3847306	0.88[EUR][1000 genomes]
rs56161352	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56311541	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58228786	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58965550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59630789	0.86[EUR][1000 genomes]
rs60316441	0.85[EUR][1000 genomes]
rs6479458	0.95[ASN][1000 genomes]
rs7024425	0.90[ASN][1000 genomes]
rs7025514	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7031917	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7042492	0.84[AMR][1000 genomes]
rs73651371	0.86[EUR][1000 genomes]
rs73651377	0.96[EUR][1000 genomes]
rs73651379	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73651380	0.96[EUR][1000 genomes]
rs73651381	0.96[EUR][1000 genomes]
rs73651384	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7853075	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9657693	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95934800-95936200	Enhancers	Fetal Lung	lung
3	chr9:95935200-95936600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:95935400-95936200	Enhancers	Spleen	Spleen
5	chr9:95935400-95936400	Enhancers	Fetal Intestine Small	intestine
6	chr9:95935400-95936600	Enhancers	Fetal Intestine Large	intestine
7	chr9:95935600-95936200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:95935600-95936200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr9:95935600-95936200	Enhancers	Fetal Thymus	thymus
10	chr9:95935600-95936200	Enhancers	Left Ventricle	heart
11	chr9:95935600-95936400	Enhancers	Duodenum Mucosa	Duodenum
12	chr9:95935600-95936400	Enhancers	Gastric	stomach
13	chr9:95935600-95936400	Enhancers	Pancreas	Pancrea
14	chr9:95935600-95936600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr9:95935800-95936200	Enhancers	Right Ventricle	heart
16	chr9:95935800-95936200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr9:95935800-95936400	Enhancers	Fetal Heart	heart
18	chr9:95935800-95936400	Enhancers	Placenta	Placenta
19	chr9:95936000-95936200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:95936000-95936200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:95936000-95936200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
22	chr9:95936000-95936200	Bivalent Enhancer	Adipose Nuclei	Adipose
23	chr9:95936000-95936200	Bivalent Enhancer	Fetal Stomach	stomach
24	chr9:95936000-95936400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr9:95936000-95936400	Enhancers	Fetal Kidney	kidney
26	chr9:95936000-95936400	Bivalent Enhancer	HepG2	liver

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