Variant report

Variant	rs59664195
Chromosome Location	chr3:21762397-21762398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57398802	1.00[AMR][1000 genomes]
rs57797125	1.00[AMR][1000 genomes]
rs58505761	1.00[AMR][1000 genomes]
rs60307599	1.00[AMR][1000 genomes]
rs60903413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797953	1.00[AMR][1000 genomes]
rs73819934	1.00[AMR][1000 genomes]
rs73819937	1.00[AMR][1000 genomes]
rs73819941	1.00[AMR][1000 genomes]
rs73819942	1.00[AMR][1000 genomes]
rs73819944	1.00[AMR][1000 genomes]
rs73819947	1.00[AMR][1000 genomes]
rs73819949	1.00[AMR][1000 genomes]
rs73819951	1.00[AMR][1000 genomes]
rs73819960	1.00[AMR][1000 genomes]
rs73822024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9813367	1.00[AMR][1000 genomes]
rs9828176	1.00[AMR][1000 genomes]
rs9830291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21758000-21764600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:21760800-21763600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:21760800-21763800	Weak transcription	NHDF-Ad	bronchial
4	chr3:21760800-21764000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:21761000-21763600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:21761000-21770200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:21761200-21763600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:21761200-21763800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:21761200-21763800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:21761400-21763200	Weak transcription	HMEC	breast
11	chr3:21761400-21763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:21762200-21762800	Enhancers	HSMMtube	muscle
13	chr3:21762200-21763600	Weak transcription	Aorta	Aorta

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