Variant report

Variant	rs73819960
Chromosome Location	chr3:21747132-21747133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57398802	1.00[AMR][1000 genomes]
rs57797125	1.00[AMR][1000 genomes]
rs58505761	1.00[AMR][1000 genomes]
rs59664195	1.00[AMR][1000 genomes]
rs60307599	1.00[AMR][1000 genomes]
rs60903413	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797953	1.00[AMR][1000 genomes]
rs73819934	1.00[AMR][1000 genomes]
rs73819937	1.00[AMR][1000 genomes]
rs73819941	1.00[AMR][1000 genomes]
rs73819942	1.00[AMR][1000 genomes]
rs73819944	1.00[AMR][1000 genomes]
rs73819947	1.00[AMR][1000 genomes]
rs73819949	1.00[AMR][1000 genomes]
rs73819951	1.00[AMR][1000 genomes]
rs73822024	1.00[AMR][1000 genomes]
rs73822025	1.00[AMR][1000 genomes]
rs9813367	1.00[AMR][1000 genomes]
rs9828176	1.00[AMR][1000 genomes]
rs9830291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21732800-21757600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:21737800-21753600	Weak transcription	Aorta	Aorta
3	chr3:21745000-21748200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:21745600-21748600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:21746200-21748600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:21746400-21747200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:21746400-21748000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:21746400-21748600	Enhancers	HMEC	breast
9	chr3:21746400-21749000	Enhancers	NHDF-Ad	bronchial
10	chr3:21747000-21747400	Enhancers	Osteobl	bone
11	chr3:21747000-21747600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:21747000-21747600	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:21747000-21747800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:21747000-21747800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:21747000-21747800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:21747000-21748000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:21747000-21748000	Enhancers	Hela-S3	cervix
18	chr3:21747000-21748200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:21747000-21748200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:21747000-21748200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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