Variant report

Variant	rs59666109
Chromosome Location	chr14:81683267-81683268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81682255..81691444-chr14:81709014..81722196,43	MCF-7	breast:
2	chr14:81635464..81641822-chr14:81682247..81689009,10	K562	blood:
3	chr14:81634129..81641173-chr14:81683190..81688873,17	MCF-7	breast:
4	chr14:81682072..81683582-chr14:81925884..81928192,2	MCF-7	breast:
5	chr14:81420309..81422917-chr14:81682384..81684780,2	MCF-7	breast:
6	chr14:81405868..81408101-chr14:81681556..81683750,2	K562	blood:

Variant related genes	Relation type
ENSG00000100629	Chromatin interaction
ENSG00000165409	Chromatin interaction
ENSG00000258999	Chromatin interaction
ENSG00000205579	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135816	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10136239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140780	0.90[AFR][1000 genomes]
rs10145323	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10148333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11851828	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17094177	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28656130	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640110	0.81[AFR][1000 genomes]
rs73344366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73346377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8005919	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81637000-81683800	Weak transcription	Small Intestine	intestine
2	chr14:81644200-81683600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr14:81644600-81685400	Weak transcription	Right Ventricle	heart
4	chr14:81651000-81685000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:81652600-81685400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:81656600-81683400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:81660800-81685400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:81661000-81685400	Weak transcription	Aorta	Aorta
9	chr14:81662600-81684600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:81662800-81685400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:81663000-81683800	Weak transcription	Fetal Brain Male	brain
12	chr14:81666400-81683400	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr14:81666800-81685000	Weak transcription	Stomach Mucosa	stomach
14	chr14:81667600-81684000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:81669600-81684600	Weak transcription	HSMMtube	muscle
16	chr14:81670600-81685200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:81671200-81683400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:81672800-81684600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:81673600-81683600	ZNF genes & repeats	GM12878-XiMat	blood
20	chr14:81674000-81684000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:81674000-81685000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:81674000-81685400	Weak transcription	Colonic Mucosa	Colon
23	chr14:81675200-81683800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:81675200-81683800	Weak transcription	Lung	lung
25	chr14:81675200-81685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:81675200-81685400	Weak transcription	Pancreas	Pancrea
27	chr14:81675200-81685600	Weak transcription	Gastric	stomach
28	chr14:81675400-81683800	Weak transcription	Spleen	Spleen
29	chr14:81675400-81685400	Weak transcription	Esophagus	oesophagus
30	chr14:81675600-81683400	Strong transcription	HSMM	muscle
31	chr14:81675600-81684600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:81676200-81683400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:81676400-81684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:81676600-81683400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr14:81676600-81683600	Strong transcription	Primary B cells from cord blood	blood
36	chr14:81676600-81684400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:81677400-81683600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr14:81677800-81685400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:81678000-81684400	Weak transcription	NHEK	skin
40	chr14:81678000-81685000	Weak transcription	Fetal Kidney	kidney
41	chr14:81678000-81685400	Weak transcription	Psoas Muscle	Psoas
42	chr14:81678800-81684600	Weak transcription	Fetal Heart	heart
43	chr14:81679000-81683400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr14:81679200-81683400	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr14:81680800-81683400	Strong transcription	Liver	Liver
46	chr14:81680800-81685000	Weak transcription	Fetal Stomach	stomach
47	chr14:81681200-81685000	Weak transcription	Right Atrium	heart
48	chr14:81681400-81683800	Genic enhancers	Dnd41	blood
49	chr14:81681600-81683400	Strong transcription	NHLF	lung
50	chr14:81682000-81683800	Weak transcription	Colon Smooth Muscle	Colon

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