Variant report

Variant	rs4640110
Chromosome Location	chr14:81692191-81692192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10130030	0.82[AFR][1000 genomes]
rs10135816	0.87[AFR][1000 genomes]
rs10136239	0.88[AFR][1000 genomes]
rs10145323	0.81[AFR][1000 genomes]
rs11851828	0.89[AFR][1000 genomes]
rs12586249	0.86[EUR][1000 genomes]
rs1864169	0.84[EUR][1000 genomes]
rs1951616	0.84[EUR][1000 genomes]
rs1957546	0.80[EUR][1000 genomes]
rs2288498	0.84[EUR][1000 genomes]
rs28656130	0.90[AFR][1000 genomes]
rs4899786	0.83[EUR][1000 genomes]
rs59666109	0.81[AFR][1000 genomes]
rs7142641	0.84[EUR][1000 genomes]
rs7144005	0.82[EUR][1000 genomes]
rs7148100	0.84[EUR][1000 genomes]
rs73346377	0.88[AFR][1000 genomes]
rs8005919	0.89[AFR][1000 genomes]
rs8006036	0.81[EUR][1000 genomes]
rs8010219	0.84[EUR][1000 genomes]
rs8014406	0.82[EUR][1000 genomes]
rs8016352	0.82[EUR][1000 genomes]
rs9323697	0.88[AFR][1000 genomes]
rs9806020	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a
3	esv3530694	chr14:81691626-81693527	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3530695	chr14:81691626-81693527	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81688200-81704800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:81688600-81693200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr14:81688800-81700600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81689400-81700600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:81689600-81693800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:81691400-81692400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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