Variant report

Variant	rs7144005
Chromosome Location	chr14:81656437-81656438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81653722..81660939-chr14:81683638..81690429,10	MCF-7	breast:
2	chr14:81656301..81665753-chr14:81684174..81688927,14	MCF-7	breast:
3	chr14:81655881..81668737-chr14:81683092..81689639,25	K562	blood:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10149681	0.94[ASN][1000 genomes]
rs12147118	0.98[ASN][1000 genomes]
rs12586249	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12590764	0.91[ASN][1000 genomes]
rs1864169	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1951616	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2099108	0.94[ASN][1000 genomes]
rs2288498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288499	0.80[ASN][1000 genomes]
rs28890880	0.86[ASN][1000 genomes]
rs4363794	0.95[ASN][1000 genomes]
rs4640110	0.82[EUR][1000 genomes]
rs4899786	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7142641	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7148100	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7149672	0.98[ASN][1000 genomes]
rs759939	0.80[ASN][1000 genomes]
rs8004096	0.89[ASN][1000 genomes]
rs8006036	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007841	0.95[ASN][1000 genomes]
rs8009888	0.80[AMR][1000 genomes]
rs8010219	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011097	0.91[ASN][1000 genomes]
rs8014406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016352	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016982	0.90[ASN][1000 genomes]
rs8021125	0.91[ASN][1000 genomes]
rs8021385	0.91[ASN][1000 genomes]
rs9646167	0.80[ASN][1000 genomes]
rs9806020	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9806027	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902117	chr14:81643800-81682392	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81637000-81659000	Weak transcription	Esophagus	oesophagus
2	chr14:81637000-81683800	Weak transcription	Small Intestine	intestine
3	chr14:81637200-81658200	Weak transcription	HSMMtube	muscle
4	chr14:81637200-81658800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:81637200-81658800	Weak transcription	Colonic Mucosa	Colon
6	chr14:81637200-81658800	Weak transcription	Left Ventricle	heart
7	chr14:81637400-81656800	Weak transcription	HMEC	breast
8	chr14:81637400-81658800	Weak transcription	Fetal Brain Male	brain
9	chr14:81637400-81659000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:81638600-81670200	Weak transcription	Psoas Muscle	Psoas
11	chr14:81640000-81657200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:81640000-81658800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:81642400-81658800	Weak transcription	Pancreas	Pancrea
14	chr14:81643600-81658800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:81643800-81683200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:81644200-81658400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:81644200-81683600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:81644600-81658200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:81644600-81658600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:81644600-81658800	Weak transcription	Brain Angular Gyrus	brain
21	chr14:81644600-81666400	Weak transcription	Stomach Mucosa	stomach
22	chr14:81644600-81685400	Weak transcription	Right Ventricle	heart
23	chr14:81644800-81675600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:81645000-81658800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:81646000-81664800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:81646200-81674800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:81647200-81664600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:81647200-81674400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr14:81647400-81674600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr14:81648000-81671400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr14:81648600-81662200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:81648800-81667800	Weak transcription	Fetal Heart	heart
33	chr14:81649000-81660400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr14:81649200-81656600	Weak transcription	NHDF-Ad	bronchial
35	chr14:81649200-81657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:81649200-81659000	Weak transcription	Brain Substantia Nigra	brain
37	chr14:81649200-81660400	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:81649200-81677800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:81649400-81657600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:81649400-81658800	Weak transcription	Lung	lung
41	chr14:81649400-81660400	Weak transcription	Aorta	Aorta
42	chr14:81649600-81658800	Weak transcription	Brain Anterior Caudate	brain
43	chr14:81649600-81658800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr14:81649600-81658800	Weak transcription	Ovary	ovary
45	chr14:81650200-81657200	Weak transcription	NHLF	lung
46	chr14:81650400-81665000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:81650600-81676600	Strong transcription	Placenta	Placenta
48	chr14:81650800-81658800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr14:81651000-81658800	Weak transcription	Colon Smooth Muscle	Colon
50	chr14:81651000-81660400	Weak transcription	Brain Cingulate Gyrus	brain

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