Variant report
| Variant | rs28890880 |
|---|---|
| Chromosome Location | chr14:81708031-81708032 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:81683519..81693455-chr14:81706363..81723125,33 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165417 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10149681 | 0.88[ASN][1000 genomes] |
| rs12147118 | 0.88[ASN][1000 genomes] |
| rs12590764 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1864169 | 0.80[ASN][1000 genomes] |
| rs1951616 | 0.85[ASN][1000 genomes] |
| rs1957546 | 0.85[ASN][1000 genomes] |
| rs1957549 | 0.83[EUR][1000 genomes] |
| rs1991516 | 0.80[EUR][1000 genomes] |
| rs2099108 | 0.88[ASN][1000 genomes] |
| rs2288498 | 0.86[ASN][1000 genomes] |
| rs4363794 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7142641 | 0.88[ASN][1000 genomes] |
| rs7144005 | 0.86[ASN][1000 genomes] |
| rs7148100 | 0.88[ASN][1000 genomes] |
| rs7149672 | 0.88[ASN][1000 genomes] |
| rs8004096 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8006036 | 0.87[ASN][1000 genomes] |
| rs8007841 | 0.86[ASN][1000 genomes] |
| rs8009519 | 0.81[EUR][1000 genomes] |
| rs8010219 | 0.91[ASN][1000 genomes] |
| rs8011097 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8014406 | 0.86[ASN][1000 genomes] |
| rs8016352 | 0.85[ASN][1000 genomes] |
| rs8016982 | 0.91[ASN][1000 genomes] |
| rs8021125 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8021385 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9806020 | 0.86[ASN][1000 genomes] |
| rs9806027 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832841 | chr14:81588322-81743921 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 86 gene(s) | inside rSNPs | diseases |
| 2 | nsv902118 | chr14:81679650-81715989 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | n/a |
| 3 | nsv974355 | chr14:81705202-81712801 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv3371539 | chr14:81707699-81708747 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
