Variant report

Variant	rs8016982
Chromosome Location	chr14:81707057-81707058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81683519..81693455-chr14:81706363..81723125,33	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10149681	0.92[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11621116	0.81[CHB][hapmap]
rs12147118	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590764	0.96[ASN][1000 genomes]
rs1864167	0.87[CHB][hapmap]
rs1864169	0.96[CHB][hapmap];0.84[ASN][1000 genomes]
rs1951616	0.90[ASN][1000 genomes]
rs1957546	0.87[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1991516	0.87[CHB][hapmap]
rs2099108	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241621	0.82[CHB][hapmap]
rs2288498	0.90[ASN][1000 genomes]
rs2288499	0.87[CHB][hapmap]
rs28890880	0.91[ASN][1000 genomes]
rs3815953	0.87[CHB][hapmap]
rs4363794	0.92[ASN][1000 genomes]
rs6574631	0.87[CHB][hapmap]
rs7142641	0.95[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs7144005	0.90[ASN][1000 genomes]
rs7148100	0.95[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs7149672	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161073	0.87[CHB][hapmap]
rs759939	0.87[CHB][hapmap]
rs8004096	0.94[ASN][1000 genomes]
rs8006036	0.91[ASN][1000 genomes]
rs8007841	0.92[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8010219	0.96[ASN][1000 genomes]
rs8011097	0.96[ASN][1000 genomes]
rs8014406	0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs8016352	0.87[ASN][1000 genomes]
rs8021125	0.96[ASN][1000 genomes]
rs8021385	0.96[ASN][1000 genomes]
rs9646167	0.87[CHB][hapmap]
rs9806020	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs9806027	0.91[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a
3	nsv974355	chr14:81705202-81712801	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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