Variant report

Variant	rs10149681
Chromosome Location	chr14:81686319-81686320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:69)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:69 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr14:81409086..81412079-chr14:81684654..81686943,2	K562	blood:
2	chr1:16840577..16841089-chr14:81685706..81686413,2	HCT-116	colon:
3	chr14:81682255..81691444-chr14:81709014..81722196,43	MCF-7	breast:
4	chr14:81683389..81688783-chr14:81897521..81903580,11	MCF-7	breast:
5	chr14:81635245..81640402-chr14:81683793..81689293,8	MCF-7	breast:
6	chr14:81685988..81686780-chr17:57919627..57920209,2	Hela-S3	cervix:
7	chr14:81684709..81688864-chr14:81899235..81906709,16	MCF-7	breast:
8	chr14:81574238..81576394-chr14:81685477..81688391,2	K562	blood:
9	chr14:81685863..81686856-chr7:44925046..44926000,2	Hela-S3	cervix:
10	chr14:81683519..81693455-chr14:81706363..81723125,33	MCF-7	breast:
11	chr14:81683547..81687186-chr14:81935321..81938414,4	K562	blood:
12	chr14:81665997..81674006-chr14:81683759..81689461,17	MCF-7	breast:
13	chr14:81421307..81423560-chr14:81685821..81687772,2	MCF-7	breast:
14	chr14:81685897..81686866-chr7:33101884..33102882,2	Hela-S3	cervix:
15	chr14:81684632..81686408-chr6:42713081..42715473,2	MCF-7	breast:
16	chr14:81651257..81653411-chr14:81683481..81686410,2	MCF-7	breast:
17	chr14:81685913..81687498-chr14:81724486..81727232,2	K562	blood:
18	chr14:81685776..81687445-chr14:81891086..81893956,2	K562	blood:
19	chr14:81685583..81687779-chr6:30708570..30711390,2	MCF-7	breast:
20	chr14:81684559..81686962-chr14:81944393..81946438,2	MCF-7	breast:
21	chr14:81684235..81687113-chr14:81978214..81980524,2	MCF-7	breast:
22	chr14:81684768..81687398-chr14:81789719..81791458,3	MCF-7	breast:
23	chr14:81316288..81318355-chr14:81684357..81686706,2	K562	blood:
24	chr14:81685695..81688559-chr14:81726422..81730373,5	MCF-7	breast:
25	chr14:81685182..81687024-chr8:127565890..127568398,2	MCF-7	breast:
26	chr14:81684496..81687014-chr14:81780787..81782724,4	MCF-7	breast:
27	chr14:81685817..81687748-chr20:55839278..55841337,2	MCF-7	breast:
28	chr14:81685671..81687321-chr14:81879290..81881702,3	MCF-7	breast:
29	chr14:81685512..81688404-chr14:81891914..81896329,4	MCF-7	breast:
30	chr14:81684386..81687381-chr14:81725613..81728928,6	MCF-7	breast:
31	chr14:81685634..81687165-chr3:161089458..161091506,2	MCF-7	breast:
32	chr14:81635464..81641822-chr14:81682247..81689009,10	K562	blood:
33	chr14:81634129..81641173-chr14:81683190..81688873,17	MCF-7	breast:
34	chr14:81684366..81687032-chr14:81998471..82002054,3	MCF-7	breast:
35	chr14:81684503..81687134-chr14:81866673..81870053,4	K562	blood:
36	chr14:81684973..81687245-chr14:81740036..81742167,2	K562	blood:
37	chr14:81685770..81687296-chr14:81799417..81802268,2	K562	blood:
38	chr14:81627657..81630242-chr14:81684338..81686999,2	MCF-7	breast:
39	chr14:81684734..81687566-chr14:81785566..81790169,4	MCF-7	breast:
40	chr14:81684792..81690788-chr14:81724993..81730571,6	K562	blood:
41	chr14:81635464..81638481-chr14:81684307..81689009,9	K562	blood:
42	chr14:81406001..81408090-chr14:81684696..81687286,2	MCF-7	breast:
43	chr1:17230734..17232563-chr14:81684596..81686685,2	MCF-7	breast:
44	chr14:81685803..81688081-chr17:62223378..62225189,2	MCF-7	breast:
45	chr14:81685465..81686386-chr19:14016942..14017531,2	Hela-S3	cervix:
46	chr14:69863611..69866530-chr14:81685832..81688549,2	K562	blood:
47	chr14:81686218..81688258-chr14:81998585..82000595,3	MCF-7	breast:
48	chr14:81456409..81459092-chr14:81684225..81686871,2	MCF-7	breast:
49	chr14:81684527..81687237-chr9:91145457..91147469,2	MCF-7	breast:
50	chr14:81684581..81688465-chr14:81899255..81904181,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction
ENSG00000261717	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000242163	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000272426	Chromatin interaction
ENSG00000258999	Chromatin interaction
ENSG00000206652	Chromatin interaction
ENSG00000140022	Chromatin interaction
ENSG00000166822	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000059588	Chromatin interaction
ENSG00000122643	Chromatin interaction
ENSG00000182325	Chromatin interaction
ENSG00000198668	Chromatin interaction
ENSG00000165409	Chromatin interaction
ENSG00000131944	Chromatin interaction
ENSG00000185803	Chromatin interaction
ENSG00000132016	Chromatin interaction
ENSG00000258605	Chromatin interaction
ENSG00000071537	Chromatin interaction
ENSG00000199753	Chromatin interaction
ENSG00000121289	Chromatin interaction
ENSG00000108821	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000100629	Chromatin interaction
ENSG00000132024	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000100632	Chromatin interaction
ENSG00000123552	Chromatin interaction
ENSG00000124659	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000270343	Chromatin interaction
ENSG00000196542	Chromatin interaction
ENSG00000205579	Chromatin interaction
ENSG00000221303	Chromatin interaction
ENSG00000266402	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000258675	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10133562	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs1035948	0.83[CHD][hapmap]
rs10483975	0.82[CHB][hapmap]
rs11159493	0.87[CHB][hapmap]
rs11159494	0.87[CHB][hapmap]
rs11621116	0.86[CHB][hapmap]
rs12147118	0.93[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12590764	0.94[ASN][1000 genomes]
rs1864167	0.84[CHD][hapmap]
rs1864169	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1885601	0.87[CHB][hapmap];0.87[CHD][hapmap]
rs1951614	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs1951616	0.94[ASN][1000 genomes]
rs1957546	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2099108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241621	0.91[CHB][hapmap]
rs2241622	0.86[CHB][hapmap]
rs2288498	0.94[ASN][1000 genomes]
rs2288499	0.87[CHD][hapmap]
rs28890880	0.88[ASN][1000 genomes]
rs3815953	0.87[CHD][hapmap]
rs4363794	0.96[ASN][1000 genomes]
rs61980900	0.81[ASN][1000 genomes]
rs6574631	0.87[CHD][hapmap]
rs7142641	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7144005	0.94[ASN][1000 genomes]
rs7148100	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7149672	0.86[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8004096	0.92[ASN][1000 genomes]
rs8006036	0.95[ASN][1000 genomes]
rs8007841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8010219	0.93[ASN][1000 genomes]
rs8011097	0.94[ASN][1000 genomes]
rs8014406	0.86[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs8016352	0.91[ASN][1000 genomes]
rs8016982	0.92[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8021125	0.94[ASN][1000 genomes]
rs8021385	0.94[ASN][1000 genomes]
rs9806020	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9806027	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a
3	esv3322534	chr14:81685549-81688597	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
4	esv3415751	chr14:81686258-81686611	Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	48 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10149681	GSTZ1	cis	parietal	SCAN
rs10149681	STON2	cis	parietal	SCAN
rs10149681	C14orf145	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81684000-81688000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:81684200-81689200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:81684400-81687800	Active TSS	Thymus	Thymus
4	chr14:81684400-81687800	Active TSS	K562	blood
5	chr14:81684600-81688000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:81684600-81688000	Active TSS	HSMMtube	muscle
7	chr14:81684600-81688000	Active TSS	NHLF	lung
8	chr14:81684600-81688200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:81684600-81688400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:81684800-81687800	Active TSS	GM12878-XiMat	blood
11	chr14:81684800-81688000	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr14:81684800-81688000	Active TSS	Fetal Brain Female	brain
13	chr14:81684800-81688200	Active TSS	H1 Cell Line	embryonic stem cell
14	chr14:81684800-81688200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:81684800-81688200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:81684800-81688400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:81684800-81688600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr14:81685000-81687000	Active TSS	Right Atrium	heart
19	chr14:81685000-81687600	Active TSS	HMEC	breast
20	chr14:81685000-81687800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:81685000-81687800	Active TSS	Fetal Thymus	thymus
22	chr14:81685000-81687800	Active TSS	NHDF-Ad	bronchial
23	chr14:81685000-81688000	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr14:81685000-81688000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:81685000-81688000	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr14:81685000-81688000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:81685000-81688000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:81685000-81688000	Active TSS	Brain Germinal Matrix	brain
29	chr14:81685000-81688000	Active TSS	Fetal Intestine Large	intestine
30	chr14:81685000-81688000	Active TSS	Fetal Kidney	kidney
31	chr14:81685000-81688000	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr14:81685000-81688000	Active TSS	Stomach Smooth Muscle	stomach
33	chr14:81685000-81688200	Active TSS	Brain Anterior Caudate	brain
34	chr14:81685000-81688200	Active TSS	Fetal Stomach	stomach
35	chr14:81685000-81688400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:81685000-81688400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:81685200-81687800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:81685200-81687800	Active TSS	Muscle Satellite Cultured Cells	--
39	chr14:81685200-81687800	Active TSS	Hela-S3	cervix
40	chr14:81685200-81688000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:81685200-81688000	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr14:81685200-81688000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:81685200-81688000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:81685200-81688000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:81685200-81688000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:81685200-81688000	Active TSS	Fetal Brain Male	brain
47	chr14:81685200-81688000	Active TSS	Fetal Heart	heart
48	chr14:81685200-81688000	Active TSS	Fetal Intestine Small	intestine
49	chr14:81685200-81688000	Active TSS	Fetal Muscle Leg	muscle
50	chr14:81685200-81688000	Active TSS	Skeletal Muscle Male	skeletal muscle

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