Variant report

Variant	rs1864169
Chromosome Location	chr14:81670033-81670034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81665997..81674006-chr14:81683759..81689461,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10149681	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11621116	0.86[CHB][hapmap]
rs12147118	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12586249	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12590764	0.84[ASN][1000 genomes]
rs1864167	0.83[CHB][hapmap]
rs1951616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957546	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1991516	0.83[CHB][hapmap]
rs2099108	0.87[ASN][1000 genomes]
rs2241622	0.82[CHB][hapmap]
rs2288498	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2288499	0.83[CHB][hapmap]
rs28890880	0.80[ASN][1000 genomes]
rs3815953	0.83[CHB][hapmap]
rs4363794	0.88[ASN][1000 genomes]
rs4640110	0.84[EUR][1000 genomes]
rs4899786	0.89[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6574631	0.83[CHB][hapmap]
rs7142641	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144005	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7148100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149294	0.80[AMR][1000 genomes]
rs7149672	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7160599	0.83[CHB][hapmap];0.80[AMR][1000 genomes]
rs7161073	0.91[CHB][hapmap]
rs759939	0.83[CHB][hapmap]
rs8004096	0.82[ASN][1000 genomes]
rs8006036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8007841	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs8009888	0.82[AMR][1000 genomes]
rs8010219	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011097	0.84[ASN][1000 genomes]
rs8014406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8016352	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8016982	0.96[CHB][hapmap];0.84[ASN][1000 genomes]
rs8021125	0.84[ASN][1000 genomes]
rs8021385	0.84[ASN][1000 genomes]
rs9646167	0.83[CHB][hapmap]
rs9806020	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9806027	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902117	chr14:81643800-81682392	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81637000-81683800	Weak transcription	Small Intestine	intestine
2	chr14:81638600-81670200	Weak transcription	Psoas Muscle	Psoas
3	chr14:81643800-81683200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:81644200-81683600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:81644600-81685400	Weak transcription	Right Ventricle	heart
6	chr14:81644800-81675600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:81646200-81674800	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:81647200-81674400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:81647400-81674600	Strong transcription	Primary B cells from peripheral blood	blood
10	chr14:81648000-81671400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr14:81649200-81677800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:81650600-81676600	Strong transcription	Placenta	Placenta
13	chr14:81651000-81685000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:81652600-81685400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:81654200-81683200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:81656000-81673200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:81656600-81682800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:81656600-81683000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:81656600-81683400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:81657000-81670400	Strong transcription	Fetal Intestine Large	intestine
21	chr14:81657000-81674000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:81657200-81672800	Strong transcription	Fetal Lung	lung
23	chr14:81657200-81673200	Strong transcription	HSMM	muscle
24	chr14:81659400-81676600	Weak transcription	NHLF	lung
25	chr14:81660600-81673000	Strong transcription	Primary B cells from cord blood	blood
26	chr14:81660800-81674600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:81660800-81674600	Weak transcription	Pancreas	Pancrea
28	chr14:81660800-81685400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:81661000-81685400	Weak transcription	Aorta	Aorta
30	chr14:81662400-81674200	Weak transcription	Fetal Intestine Small	intestine
31	chr14:81662600-81672400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:81662600-81672400	Weak transcription	Spleen	Spleen
33	chr14:81662600-81672800	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:81662600-81673400	Weak transcription	Fetal Stomach	stomach
35	chr14:81662600-81673600	Weak transcription	Esophagus	oesophagus
36	chr14:81662600-81673600	Weak transcription	Gastric	stomach
37	chr14:81662600-81674400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:81662600-81674400	Weak transcription	Lung	lung
39	chr14:81662600-81684600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr14:81662800-81672200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:81662800-81685400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr14:81663000-81672600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr14:81663000-81683200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr14:81663000-81683800	Weak transcription	Fetal Brain Male	brain
45	chr14:81664200-81671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr14:81666200-81670200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:81666200-81670200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:81666200-81674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:81666400-81670400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr14:81666400-81670600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links