Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:81715864..81717635-chr14:81717686..81719523,2	K562	blood:
2	chr14:81712042..81713617-chr14:81715610..81718597,2	K562	blood:
3	chr14:81685084..81689489-chr14:81718183..81722671,5	K562	blood:
4	chr14:81683519..81693455-chr14:81706363..81723125,33	MCF-7	breast:
5	chr14:81712017..81715748-chr14:81716669..81719920,4	MCF-7	breast:
6	chr14:81682255..81691444-chr14:81709014..81722196,43	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000205579	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10133562	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10483975	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11621116	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12586249	0.80[AMR][1000 genomes]
rs17111601	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1864169	0.82[AMR][1000 genomes]
rs1951616	0.82[AMR][1000 genomes]
rs1957546	0.80[AMR][1000 genomes]
rs2241621	0.91[ASN][1000 genomes]
rs2241622	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2288498	0.80[AMR][1000 genomes]
rs6574634	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7142641	0.82[AMR][1000 genomes]
rs7144005	0.80[AMR][1000 genomes]
rs7148100	0.82[AMR][1000 genomes]
rs7149103	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149294	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160599	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7161073	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006036	0.82[AMR][1000 genomes]
rs8007595	0.90[ASN][1000 genomes]
rs8009696	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8010219	0.82[AMR][1000 genomes]
rs8014406	0.80[AMR][1000 genomes]
rs8015423	0.80[ASN][1000 genomes]
rs9806020	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81711600-81722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:81714000-81725600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:81714000-81725800	Weak transcription	NHEK	skin
4	chr14:81714200-81725600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:81714200-81726000	Weak transcription	HMEC	breast
6	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:81714400-81725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:81714400-81734000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:81714600-81725400	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:81714600-81726000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:81714800-81726200	Weak transcription	Placenta	Placenta
12	chr14:81715200-81723000	Weak transcription	Dnd41	blood
13	chr14:81715600-81718600	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search: