Variant report

Variant	rs6574634
Chromosome Location	chr14:81729751-81729752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81684377..81689943-chr14:81728055..81734631,10	K562	blood:
2	chr14:81684792..81690788-chr14:81724993..81730571,6	K562	blood:
3	chr14:81727889..81730386-chr14:81731826..81734332,3	MCF-7	breast:
4	chr14:81727868..81730785-chr14:81767384..81769125,2	MCF-7	breast:
5	chr14:81684348..81690583-chr14:81729061..81738251,32	MCF-7	breast:
6	chr14:81728442..81730131-chr14:81732083..81734711,2	K562	blood:
7	chr14:81685695..81688559-chr14:81726422..81730373,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10133562	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483975	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11621116	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111601	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2241621	0.93[ASN][1000 genomes]
rs2241622	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149103	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149294	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160599	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7161073	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72695758	0.80[ASN][1000 genomes]
rs8007595	0.93[ASN][1000 genomes]
rs8009696	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8009888	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:81714400-81734000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:81719800-81735600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:81721200-81735600	Weak transcription	Brain Anterior Caudate	brain
5	chr14:81721200-81742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:81721400-81739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:81721600-81733400	Weak transcription	K562	blood
8	chr14:81721600-81739800	Weak transcription	Ovary	ovary
9	chr14:81722600-81741800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:81723000-81734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:81723200-81730200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:81723200-81732000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:81723400-81730200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:81723400-81734000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:81723400-81734200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:81724400-81730200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:81724400-81735400	Weak transcription	Fetal Intestine Large	intestine
18	chr14:81724600-81736400	Weak transcription	Fetal Intestine Small	intestine
19	chr14:81724600-81741800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:81724800-81736400	Weak transcription	Spleen	Spleen
22	chr14:81725000-81739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:81725000-81740000	Weak transcription	Esophagus	oesophagus
24	chr14:81725000-81743600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:81725600-81734000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:81725600-81734400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:81725800-81734200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:81725800-81734200	Strong transcription	NHEK	skin
29	chr14:81726000-81730600	Strong transcription	HMEC	breast
30	chr14:81726400-81732600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr14:81726400-81733800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:81726400-81734200	Weak transcription	Placenta	Placenta
33	chr14:81726800-81736600	Weak transcription	Brain Substantia Nigra	brain
34	chr14:81727600-81736800	Weak transcription	Psoas Muscle	Psoas
35	chr14:81727800-81734200	Weak transcription	Fetal Muscle Leg	muscle
36	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
37	chr14:81728000-81736600	Weak transcription	Fetal Brain Male	brain
38	chr14:81728200-81732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr14:81728200-81732200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:81728200-81734200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:81728400-81732200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:81728800-81730200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:81728800-81731200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr14:81729000-81730800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr14:81729000-81735800	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:81729200-81730200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:81729200-81730200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr14:81729400-81730000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:81729400-81730000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach

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