Variant report
| Variant | rs8009696 |
|---|---|
| Chromosome Location | chr14:81711156-81711157 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000165417 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10133562 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10483975 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11621116 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17111601 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2241621 | 0.84[ASN][1000 genomes] |
| rs2241622 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6574634 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7149103 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7149294 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7160599 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7161073 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8007595 | 0.83[ASN][1000 genomes] |
| rs8009888 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832841 | chr14:81588322-81743921 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 86 gene(s) | inside rSNPs | diseases |
| 2 | nsv902118 | chr14:81679650-81715989 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | n/a |
| 3 | nsv974355 | chr14:81705202-81712801 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
