Variant report

Variant	rs8004096
Chromosome Location	chr14:81701082-81701083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81699882..81701663-chr14:81726347..81728361,2	MCF-7	breast:
2	chr14:81695496..81699679-chr14:81700603..81703669,3	K562	blood:
3	chr14:81685597..81686245-chr14:81700657..81701205,2	MCF-7	breast:
4	chr14:81644138..81645856-chr14:81700213..81702978,2	K562	blood:

Variant related genes	Relation type
ENSG00000270343	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10149681	0.92[ASN][1000 genomes]
rs1035948	0.86[EUR][1000 genomes]
rs11159494	0.86[EUR][1000 genomes]
rs11850714	0.86[EUR][1000 genomes]
rs12147118	0.91[ASN][1000 genomes]
rs12590764	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1864169	0.82[ASN][1000 genomes]
rs1885601	0.83[EUR][1000 genomes]
rs1951614	0.86[EUR][1000 genomes]
rs1951615	0.86[EUR][1000 genomes]
rs1951616	0.92[ASN][1000 genomes]
rs1957546	0.92[ASN][1000 genomes]
rs1957549	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1991516	0.88[EUR][1000 genomes]
rs2099108	0.91[ASN][1000 genomes]
rs2288497	0.84[EUR][1000 genomes]
rs2288498	0.89[ASN][1000 genomes]
rs2288499	0.86[EUR][1000 genomes]
rs28890880	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3815953	0.85[EUR][1000 genomes]
rs4363794	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61980899	0.82[EUR][1000 genomes]
rs61980900	0.84[EUR][1000 genomes]
rs6574631	0.86[EUR][1000 genomes]
rs7142641	0.91[ASN][1000 genomes]
rs7144005	0.89[ASN][1000 genomes]
rs7148100	0.91[ASN][1000 genomes]
rs7149672	0.91[ASN][1000 genomes]
rs759939	0.85[EUR][1000 genomes]
rs8006036	0.90[ASN][1000 genomes]
rs8007841	0.94[ASN][1000 genomes]
rs8009519	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8010219	0.94[ASN][1000 genomes]
rs8011097	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8014406	0.89[ASN][1000 genomes]
rs8016352	0.90[ASN][1000 genomes]
rs8016982	0.94[ASN][1000 genomes]
rs8021125	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8021385	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9806020	0.93[ASN][1000 genomes]
rs9806027	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81688200-81704800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:81700000-81701400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:81700400-81701200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:81700400-81701200	Enhancers	Fetal Heart	heart
5	chr14:81700400-81701200	Enhancers	HSMM	muscle
6	chr14:81700400-81701400	Enhancers	Fetal Lung	lung
7	chr14:81700400-81701600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:81700400-81701600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:81700600-81701200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:81700600-81701600	Enhancers	Brain Germinal Matrix	brain
11	chr14:81700800-81701600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:81700800-81701600	Enhancers	Dnd41	blood
13	chr14:81701000-81703400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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