Variant report

Variant	rs59675676
Chromosome Location	chr19:42252527-42252528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42210648..42213513-chr19:42249142..42252570,4	MCF-7	breast:
2	chr19:42252204..42254602-chr19:42292364..42294329,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007306	Chromatin interaction
ENSG00000105388	Chromatin interaction
ENSG00000267881	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56777717	1.00[AMR][1000 genomes]
rs58127675	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59623589	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61325364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508994	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508995	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249202	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249254	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249385	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7256339	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257822	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932050	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932052	1.00[AMR][1000 genomes]
rs73932056	1.00[AMR][1000 genomes]
rs73932057	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932064	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932065	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932066	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932080	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9749010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3425986	chr19:42212540-42259719	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3430577	chr19:42247653-42285973	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv911774	chr19:42250325-42288821	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42250800-42253200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:42251000-42254400	Weak transcription	Pancreas	Pancrea
3	chr19:42251400-42256200	Weak transcription	Esophagus	oesophagus
4	chr19:42252400-42253200	Enhancers	Colonic Mucosa	Colon
5	chr19:42252400-42253200	Enhancers	Stomach Mucosa	stomach
6	chr19:42252400-42254400	Weak transcription	Rectal Mucosa Donor 31	rectum

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