Variant report

Variant	rs7256339
Chromosome Location	chr19:42246807-42246808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42245444..42247373-chr19:42295187..42298077,2	MCF-7	breast:
2	chr19:42245127..42247870-chr19:42365049..42367593,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56777717	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58127675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59623589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59675676	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61325364	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508994	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508995	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249254	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249385	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249444	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932050	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932056	1.00[AMR][1000 genomes]
rs73932057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932085	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932087	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9749010	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3425986	chr19:42212540-42259719	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42240400-42249600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr19:42243400-42247800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr19:42245000-42248000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr19:42245800-42248000	Weak transcription	Fetal Intestine Large	intestine
5	chr19:42245800-42248200	Weak transcription	Fetal Intestine Small	intestine
6	chr19:42246200-42247000	Enhancers	Stomach Mucosa	stomach
7	chr19:42246200-42248400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr19:42246600-42250600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr19:42246600-42250800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr19:42246600-42251000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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