Variant report

Variant	rs73932050
Chromosome Location	chr19:42244419-42244420
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42238606..42240791-chr19:42240952..42244965,6	MCF-7	breast:
2	chr19:42236810..42239386-chr19:42242980..42245122,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56777717	1.00[AMR][1000 genomes]
rs58127675	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59623589	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59675676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61325364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508994	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6508995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249254	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249385	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7249444	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7255583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7256339	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257822	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932052	1.00[AMR][1000 genomes]
rs73932056	1.00[AMR][1000 genomes]
rs73932057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932064	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932065	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932066	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932080	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932085	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932087	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932088	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9749010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3425986	chr19:42212540-42259719	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42240400-42249600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr19:42243000-42245800	Enhancers	Fetal Intestine Small	intestine
3	chr19:42243400-42245000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr19:42243400-42247800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr19:42243600-42245800	Enhancers	Stomach Mucosa	stomach
6	chr19:42243800-42244800	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr19:42243800-42245200	Enhancers	Fetal Intestine Large	intestine
8	chr19:42244400-42245000	Enhancers	Primary T cells from cord blood	blood

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