Variant report

Variant	rs59682742
Chromosome Location	chr17:33858734-33858735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12051819	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7210755	0.86[EUR][1000 genomes]
rs7210888	0.86[EUR][1000 genomes]
rs7223822	0.85[EUR][1000 genomes]
rs874722	0.86[EUR][1000 genomes]
rs9897663	0.85[EUR][1000 genomes]
rs9901285	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33851400-33862600	Weak transcription	Spleen	Spleen
2	chr17:33851600-33860600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:33856800-33860200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:33857000-33860000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr17:33858000-33858800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:33858000-33858800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr17:33858000-33859000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr17:33858000-33859000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:33858000-33860200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr17:33858200-33859000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:33858200-33859200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:33858200-33860200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:33858200-33860200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr17:33858400-33859800	Weak transcription	GM12878-XiMat	blood
15	chr17:33858400-33860200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:33858400-33860600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr17:33858600-33859400	Weak transcription	Primary T cells from cord blood	blood
18	chr17:33858600-33859400	Enhancers	Dnd41	blood
19	chr17:33858600-33860200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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