Variant report

Variant	rs874722
Chromosome Location	chr17:33870735-33870736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33870229..33872900-chr17:33904820..33906350,2	K562	blood:
2	chr17:33869056..33871204-chr17:33904265..33907146,2	K562	blood:

Variant related genes	Relation type
ENSG00000108733	Chromatin interaction
ENSG00000006125	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59682742	0.86[EUR][1000 genomes]
rs7210755	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7210888	0.92[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7223822	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9897663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33868400-33871000	Enhancers	Primary B cells from peripheral blood	blood
2	chr17:33868600-33870800	Enhancers	Primary B cells from cord blood	blood
3	chr17:33868600-33871600	Enhancers	Primary hematopoietic stem cells	blood
4	chr17:33868600-33871600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:33868600-33872200	Weak transcription	Stomach Mucosa	stomach
6	chr17:33868600-33872200	Weak transcription	A549	lung
7	chr17:33868800-33871400	Enhancers	HUVEC	blood vessel
8	chr17:33869000-33871000	Weak transcription	Small Intestine	intestine
9	chr17:33869000-33872600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr17:33869000-33873200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr17:33869600-33871000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:33869800-33877200	Weak transcription	Lung	lung
13	chr17:33870000-33871000	Enhancers	Adipose Nuclei	Adipose
14	chr17:33870000-33871000	Weak transcription	Spleen	Spleen
15	chr17:33870400-33870800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr17:33870400-33871000	Flanking Active TSS	Dnd41	blood
17	chr17:33870400-33881000	Weak transcription	K562	blood
18	chr17:33870400-33888600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr17:33870600-33871000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr17:33870600-33871000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr17:33870600-33873200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links