Variant report

Variant	rs59692571
Chromosome Location	chr9:85083077-85083078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11139579	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330819	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330820	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330821	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411663	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1411665	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1411666	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55826734	0.85[EUR][1000 genomes]
rs73469671	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7858102	0.85[EUR][1000 genomes]
rs7861448	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7870118	0.82[EUR][1000 genomes]
rs7870629	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7870927	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7875416	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85081400-85083200	Enhancers	Fetal Stomach	stomach
2	chr9:85081600-85083200	Enhancers	Fetal Muscle Leg	muscle
3	chr9:85082200-85083200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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