Variant report

Variant	rs7875416
Chromosome Location	chr9:85107147-85107148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11139579	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330819	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330820	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330821	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1411663	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55826734	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59692571	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73469671	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7858102	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7861448	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870118	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7870629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7870927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7875416	FAM75D1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85103800-85109400	Weak transcription	NHLF	lung
2	chr9:85104600-85107600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:85104600-85107800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:85105200-85111200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:85105600-85111000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:85105800-85111200	Weak transcription	Adipose Nuclei	Adipose
7	chr9:85105800-85113400	Weak transcription	Fetal Lung	lung
8	chr9:85107000-85107200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:85107000-85107200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:85107000-85107200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:85107000-85107200	Enhancers	NHDF-Ad	bronchial
12	chr9:85107000-85107200	Enhancers	NHEK	skin
13	chr9:85107000-85107400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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