Variant report

Variant	rs59709366
Chromosome Location	chr11:10304992-10304993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10303579..10305732-chr11:10323499..10326326,2	MCF-7	breast:
2	chr11:10303208..10305269-chr11:10312971..10315766,2	K562	blood:
3	chr11:10301030..10303253-chr11:10303443..10305283,2	MCF-7	breast:
4	chr11:10303143..10305587-chr11:10314306..10316893,2	MCF-7	breast:
5	chr11:10303426..10307423-chr11:10327783..10331801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000254554	Chromatin interaction
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10128609	1.00[EUR][1000 genomes]
rs10128701	1.00[EUR][1000 genomes]
rs11042616	1.00[EUR][1000 genomes]
rs11042619	1.00[EUR][1000 genomes]
rs11042631	1.00[EUR][1000 genomes]
rs11042672	1.00[EUR][1000 genomes]
rs11042674	1.00[EUR][1000 genomes]
rs11042691	1.00[EUR][1000 genomes]
rs11042694	1.00[EUR][1000 genomes]
rs11042696	1.00[EUR][1000 genomes]
rs11042697	1.00[EUR][1000 genomes]
rs11042698	1.00[EUR][1000 genomes]
rs11042701	1.00[EUR][1000 genomes]
rs11042705	1.00[EUR][1000 genomes]
rs11042706	1.00[EUR][1000 genomes]
rs11042707	1.00[EUR][1000 genomes]
rs11042708	1.00[EUR][1000 genomes]
rs11042709	1.00[EUR][1000 genomes]
rs11042710	1.00[EUR][1000 genomes]
rs11042711	1.00[EUR][1000 genomes]
rs11042715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042722	1.00[EUR][1000 genomes]
rs12269976	1.00[EUR][1000 genomes]
rs12270278	1.00[EUR][1000 genomes]
rs12270822	1.00[EUR][1000 genomes]
rs12271159	1.00[EUR][1000 genomes]
rs12271480	1.00[EUR][1000 genomes]
rs12272306	1.00[EUR][1000 genomes]
rs12273035	1.00[EUR][1000 genomes]
rs12274021	1.00[EUR][1000 genomes]
rs12277936	1.00[EUR][1000 genomes]
rs12279727	1.00[EUR][1000 genomes]
rs12279936	1.00[EUR][1000 genomes]
rs12282728	1.00[EUR][1000 genomes]
rs12285084	1.00[EUR][1000 genomes]
rs12287964	1.00[EUR][1000 genomes]
rs12288833	1.00[EUR][1000 genomes]
rs12291188	1.00[EUR][1000 genomes]
rs12291783	1.00[EUR][1000 genomes]
rs12292901	1.00[EUR][1000 genomes]
rs12294052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294064	1.00[EUR][1000 genomes]
rs1372812	1.00[EUR][1000 genomes]
rs16907612	1.00[EUR][1000 genomes]
rs16907632	1.00[EUR][1000 genomes]
rs4537746	1.00[EUR][1000 genomes]
rs5005	1.00[EUR][1000 genomes]
rs55919524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56948226	1.00[EUR][1000 genomes]
rs57138875	1.00[EUR][1000 genomes]
rs57672320	1.00[EUR][1000 genomes]
rs58354844	1.00[EUR][1000 genomes]
rs59629505	1.00[EUR][1000 genomes]
rs59651099	1.00[EUR][1000 genomes]
rs59928017	1.00[EUR][1000 genomes]
rs60051250	1.00[EUR][1000 genomes]
rs7942109	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
4	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
5	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle
6	chr11:10291200-10313600	Weak transcription	NHEK	skin
7	chr11:10291200-10314400	Weak transcription	HSMM	muscle
8	chr11:10291400-10309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10294200-10309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10294200-10311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:10295600-10306600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10295600-10307000	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:10296800-10306600	Weak transcription	NHDF-Ad	bronchial
14	chr11:10297000-10306200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:10297000-10309600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:10297800-10309400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:10298200-10306000	Weak transcription	A549	lung
18	chr11:10298200-10307000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:10298200-10313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:10298400-10306200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10299400-10308600	Weak transcription	NHLF	lung
22	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
23	chr11:10299600-10310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:10299800-10314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:10303000-10305200	Enhancers	Stomach Mucosa	stomach
26	chr11:10303200-10305000	Enhancers	HepG2	liver
27	chr11:10303200-10305200	Enhancers	Hela-S3	cervix
28	chr11:10303400-10306600	Enhancers	Liver	Liver
29	chr11:10304000-10306800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:10304000-10312400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:10304600-10307600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:10304800-10305000	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr11:10304800-10308800	Weak transcription	Fetal Intestine Large	intestine
34	chr11:10304800-10308800	Weak transcription	Fetal Intestine Small	intestine
35	chr11:10304800-10308800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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