Variant report

Variant	rs58354844
Chromosome Location	chr11:10292146-10292147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10128609	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128701	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042616	1.00[EUR][1000 genomes]
rs11042619	1.00[EUR][1000 genomes]
rs11042631	1.00[EUR][1000 genomes]
rs11042651	1.00[AMR][1000 genomes]
rs11042670	0.84[AFR][1000 genomes]
rs11042672	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042684	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11042691	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042694	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042708	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042710	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042711	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042715	1.00[EUR][1000 genomes]
rs11042722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269976	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270074	1.00[AMR][1000 genomes]
rs12270278	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270822	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271159	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271480	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272306	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273035	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277936	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279727	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279936	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280877	1.00[EUR][1000 genomes]
rs12282728	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285093	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12287964	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288716	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288833	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291188	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292901	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294052	1.00[EUR][1000 genomes]
rs12294064	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377400	0.81[AFR][1000 genomes]
rs1372812	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907612	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907632	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4537746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55919524	1.00[EUR][1000 genomes]
rs56948226	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57138875	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57672320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57743646	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59629505	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59651099	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59709366	1.00[EUR][1000 genomes]
rs59928017	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60051250	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60433518	1.00[AMR][1000 genomes]
rs7942109	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	esv3468808	chr11:10291076-10295774	Weak transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv2459856	chr11:10291533-10293979	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	esv3499249	chr11:10291626-10294924	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv3383912	chr11:10292026-10294824	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:10281200-10295000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
8	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
9	chr11:10287800-10295400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:10288000-10295000	Weak transcription	Ovary	ovary
11	chr11:10288600-10294400	Weak transcription	Placenta	Placenta
12	chr11:10289200-10299200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:10289400-10299200	Weak transcription	Small Intestine	intestine
14	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
15	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle
16	chr11:10291000-10293800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:10291000-10295000	Weak transcription	NHDF-Ad	bronchial
18	chr11:10291200-10292200	Weak transcription	Stomach Mucosa	stomach
19	chr11:10291200-10293600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:10291200-10293600	Weak transcription	A549	lung
21	chr11:10291200-10293800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:10291200-10293800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:10291200-10295000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:10291200-10295000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:10291200-10313600	Weak transcription	NHEK	skin
26	chr11:10291200-10314400	Weak transcription	HSMM	muscle
27	chr11:10291400-10293600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:10291400-10295200	Weak transcription	NHLF	lung
29	chr11:10291400-10295200	Weak transcription	Osteobl	bone
30	chr11:10291400-10296000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:10291400-10296400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:10291400-10309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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