Variant report

Variant	rs13377400
Chromosome Location	chr11:10194836-10194837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10128609	0.92[AFR][1000 genomes]
rs10128701	0.92[AFR][1000 genomes]
rs11042619	0.85[AFR][1000 genomes]
rs11042631	0.84[AFR][1000 genomes]
rs11042651	0.91[AFR][1000 genomes]
rs11042670	0.96[AFR][1000 genomes]
rs11042672	0.96[AFR][1000 genomes]
rs11042674	0.96[AFR][1000 genomes]
rs11042684	0.96[AFR][1000 genomes]
rs11042691	0.92[AFR][1000 genomes]
rs11042694	0.92[AFR][1000 genomes]
rs11042696	0.92[AFR][1000 genomes]
rs11042697	0.92[AFR][1000 genomes]
rs11042698	0.92[AFR][1000 genomes]
rs11042701	0.85[AFR][1000 genomes]
rs11042705	0.92[AFR][1000 genomes]
rs11042707	0.92[AFR][1000 genomes]
rs11042708	0.92[AFR][1000 genomes]
rs11042709	0.92[AFR][1000 genomes]
rs11042710	0.92[AFR][1000 genomes]
rs11042711	0.88[AFR][1000 genomes]
rs12269976	0.96[AFR][1000 genomes]
rs12270278	1.00[AFR][1000 genomes]
rs12270822	0.96[AFR][1000 genomes]
rs12271159	0.89[AFR][1000 genomes]
rs12271480	1.00[AFR][1000 genomes]
rs12272306	1.00[AFR][1000 genomes]
rs12273035	0.88[AFR][1000 genomes]
rs12274021	0.92[AFR][1000 genomes]
rs12277936	0.92[AFR][1000 genomes]
rs12279727	0.96[AFR][1000 genomes]
rs12279936	1.00[AFR][1000 genomes]
rs12281072	0.81[AFR][1000 genomes]
rs12282728	1.00[AFR][1000 genomes]
rs12285084	0.88[AFR][1000 genomes]
rs12285093	1.00[AFR][1000 genomes]
rs12287964	0.96[AFR][1000 genomes]
rs12288716	0.96[AFR][1000 genomes]
rs12288833	0.96[AFR][1000 genomes]
rs12291188	1.00[AFR][1000 genomes]
rs12294064	0.96[AFR][1000 genomes]
rs1372812	0.96[AFR][1000 genomes]
rs16907612	0.92[AFR][1000 genomes]
rs16907632	0.88[AFR][1000 genomes]
rs4537746	0.96[AFR][1000 genomes]
rs56948226	0.92[AFR][1000 genomes]
rs57672320	1.00[AFR][1000 genomes]
rs57743646	0.89[AFR][1000 genomes]
rs58354844	0.81[AFR][1000 genomes]
rs59629505	0.88[AFR][1000 genomes]
rs59651099	0.88[AFR][1000 genomes]
rs59928017	0.92[AFR][1000 genomes]
rs7942109	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10194800-10206800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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