Variant report

Variant	rs16907612
Chromosome Location	chr11:10277505-10277506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10128609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10128701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042616	1.00[EUR][1000 genomes]
rs11042619	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042631	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042651	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11042670	0.96[AFR][1000 genomes]
rs11042672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042674	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042684	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11042691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042701	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042715	1.00[EUR][1000 genomes]
rs11042722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270278	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271480	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272306	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274021	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280877	1.00[EUR][1000 genomes]
rs12282728	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285084	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285093	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12287964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292901	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294052	1.00[EUR][1000 genomes]
rs12294064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377400	0.92[AFR][1000 genomes]
rs1372812	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4537746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55919524	1.00[EUR][1000 genomes]
rs56948226	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57138875	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57672320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57743646	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58354844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59629505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59651099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59709366	1.00[EUR][1000 genomes]
rs59928017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60051250	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60433518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
2	chr11:10259200-10280200	Weak transcription	A549	lung
3	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:10263800-10280200	Weak transcription	Ovary	ovary
5	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:10271200-10277800	Weak transcription	Osteobl	bone
11	chr11:10272000-10278000	Weak transcription	NHDF-Ad	bronchial
12	chr11:10273400-10278800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:10273600-10277800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:10273600-10278800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:10273600-10278800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:10273600-10280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:10276600-10277600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:10276600-10277800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10276600-10278000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:10276600-10278000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:10276600-10278200	Enhancers	Colon Smooth Muscle	Colon
23	chr11:10276800-10277800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:10277000-10277600	Enhancers	Liver	Liver
25	chr11:10277000-10277600	Enhancers	Fetal Lung	lung
26	chr11:10277000-10278600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr11:10277200-10277600	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:10277200-10277600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:10277200-10277600	Enhancers	HSMMtube	muscle
30	chr11:10277200-10277600	Enhancers	HUVEC	blood vessel
31	chr11:10277200-10277600	Enhancers	NHLF	lung
32	chr11:10277200-10277800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:10277400-10277600	Enhancers	Aorta	Aorta
34	chr11:10277400-10277600	Enhancers	Left Ventricle	heart
35	chr11:10277400-10278000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr11:10277400-10278000	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:10277400-10278200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:10277400-10278200	Enhancers	HSMM	muscle
39	chr11:10277400-10279800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:10277400-10281200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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